Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21]
25,048 sequences; 402,743,189 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq4755 95.1 2e-14
>seq4755
Length=318840
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || | || || || || |||||| | || || || | | |
Sbjct 280364 TGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGTG 280423
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | ||||| ||| ||| || || ||| || || ||||| ||||||||||
Sbjct 280424 ACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAAC 280483
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || ||||| ||||| || | || ||| | | || || | || || || |
Sbjct 280484 AACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAACA 280543
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258
| ||||| || |||||| | || || || |||||| | |||| |||
Sbjct 280544 TCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGGT 280590
Score = 87.8 bits (96), Expect = 3e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| |||| || | || || || || |||||| | || || || | | |
Sbjct 279680 TGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGTG 279739
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | ||||| ||| ||| || || ||| || || ||||| ||||||||||
Sbjct 279740 ACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCAAC 279799
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | | || ||||| ||||| || | || ||| | | || || | || || || |
Sbjct 279800 AACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAACA 279859
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
| ||||| || |||||| | || || ||
Sbjct 279860 TCCAAAAGGAGTCGACTCTACACTTGGT 279887
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785920251300160
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |