Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3731 136 3e-27 seq4755 113 3e-20 >seq3731 Length=1156867 Score = 136 bits (150), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAA-ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 || || ||||| |||||| || ||||||| || |||||||| || | | ||| | Sbjct 1054742 CGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCC 1054683 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || | | ||| ||||| || || ||||||||||| Sbjct 1054682 ATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTT 1054623 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||| || || | ||| | || |||| | | || |||||||| ||||| Sbjct 1054622 ATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTAT 1054563 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||| || || | ||||| ||||| |||||||| || Sbjct 1054562 AGTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCATGTT 1054524 >seq4755 Length=318840 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || ||||| ||||| || || | | |||||| Sbjct 279894 ACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACC 279835 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || || | ||| ||||| || ||||| ||||| || Sbjct 279834 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTT 279775 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||| ||| | || | ||||||| | || ||||| | ||| || Sbjct 279774 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAAT 279715 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | || || ||||||||||||||| Sbjct 279714 CGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || ||||| ||||| || || | | |||||| Sbjct 280122 ACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACC 280063 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || || | ||| ||||| || ||||| ||||| || Sbjct 280062 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTT 280003 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||| ||| | || | ||||||| | || ||||| | ||| || Sbjct 280002 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAAT 279943 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || |||||||||||||| Sbjct 279942 CGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||| || || || || || ||||| ||||| || || | | |||||| Sbjct 280350 ACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACC 280291 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | || || | ||| ||||| || ||||| ||||| || Sbjct 280290 ATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTT 280231 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || ||| ||| | || | ||||||| | || ||||| | ||| || Sbjct 280230 ATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAAT 280171 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| | || || |||||||||||||| Sbjct 280170 CGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 29577 CACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATC 29636 |||||| || || || || || ||||| ||||| || || | | |||||| ||| || Sbjct 280572 CACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280513 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 || || || |||||| | || || | ||| ||||| || ||||| ||||| || || || Sbjct 280512 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 280453 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | || ||| ||| | || | ||||||| | || ||||| | ||| || || || Sbjct 280452 GATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTT 280393 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| | || || |||||||||||||| Sbjct 280392 ACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385101603171768