Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3765 179 3e-39 seq4294 152 4e-31 >seq3765 Length=693835 Score = 179 bits (198), Expect = 3e-39 Identities = 389/573 (68%), Gaps = 27/573 (5%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||| | |||||||| || | |||| | || || | ||||||| || Sbjct 99905 GTACCACCACCAAGATCAAAAACCAGAATATTCTTCTCACCATCCT---TTTTATCTAGG 99849 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||| |||||||| ||||| |||| | |||| | |||||| Sbjct 99848 CCATAAGCAATAGCAGCAGCGGTTGGTTCGTTAATGATTCGAAGTACATCTAAACCAGCT 99789 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || |||||||| || || || | || | |||||| ||||| || || ||||| Sbjct 99788 ATTGTCCCAGCATCTTTTGTTGCCTGACGCTGCGCATCGTTGAAATAAGCTGGGACAGTG 99729 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | || |||| ||||| | || |||| ||| || || | |||||||| | Sbjct 99728 ACTACTGCATGCGTTACCTTCTTACCAAGATATGCTTCAGCACTGCTCTTCATTTTTCCC 99669 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA--TTTTGAT-----A 282576 |||| ||||| || |||| ||||| | | | |||| | || |||| | Sbjct 99668 AAAACCATTGCAGAGATTTCCTCTGGTGCAAAC------GATTTAACTTCTGATCCAACA 99615 Query 282577 TGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCAT 282636 ||| ||||||| ||||||||| || |||| || |||||| | | || || Sbjct 99614 TGA-ACTTCAACATATGGTTTGTTCTTTTTGTTAACGACAGAAAATGGAAAGTGCTTTAT 99556 Query 282637 ATCTGATTGAACACT---TTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAA 282693 ||| |||||| | || |||| || || || || || | || ||| ||||||| Sbjct 99555 ATCCTCCTGAACAGTCGATTCGTCA--AACGTC-CTTCCGATAAGTCTTTTGACATCAAA 99499 Query 282694 AATAGTATTGGTTGGATTAACTGC-AGCTTGATATTTGGCTGCATCTCCAATCAGATGTT 282752 || ||||| || || || |||| | | |||||| |||||||||||||| ||| Sbjct 99498 AACTGTATTTTCAGGGTTTGATGTTAGCTGGTT-TTTGGCAGCATCTCCAATCAGCCGTT 99440 Query 282753 CTGTCTCTGTAA--ATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAAT 282810 | || ||| ||| ||||||||| || || | | |||||| || ||||| ||||| Sbjct 99439 CACCTTCCGTAGTGATGCAACATATGAAGGGGTAATTCTATTACCCTGGTCATTGGCAAT 99380 Query 282811 AATTTCAACTTTACCATTTTGCCATACACCTAC 282843 ||||||||| ||| || |||||||||| Sbjct 99379 AATTTCAACGCGACCTCCGTGATATACACCTAC 99347 >seq4294 Length=102949 Score = 152 bits (168), Expect = 4e-31 Identities = 342/511 (67%), Gaps = 2/511 (0%) Strand=Plus/Minus Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 |||||||| |||||||| |||||||||||||| || |||||||| || || ||||| Sbjct 80832 TCATTAATTATTCTCAACACATTAAGACCAGCTATCGCACCTGCATCCTTCGTCGCTTGA 80773 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | ||| |||||| || || |||||||| || ||||| || || || || | || Sbjct 80772 CGTTGACTATCGTTGAAGTAAGCAGGAACCGTTATAACTGCGTCAGTCACCGACCTCCCC 80713 Query 282491 ATATAAG-CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 282549 | |||| ||| || | ||||| || | ||| |||||||| | ||||| Sbjct 80712 AAATAACTCGCA-GCCACCTCCTTCATCGCGACCAACACCATAGATGAAATCTCCTCTGG 80654 Query 282550 AGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 282609 | | | ||| ||| | || ||| ||| | || || | |||||| || Sbjct 80653 AAAGAACGACTTCTCCTCACCCTTGTACTCAACTACAATCTTAGGCTTCTCACCAACCTT 80594 Query 282610 AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 282669 || ||||| |||||||||| |||||||| || || | |||| || | Sbjct 80593 AACCACTTTGAATGGCCAATGCTTCATATCACTCTGCACTGATGCATCATCGAATCGACG 80534 Query 282670 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT 282729 ||| || | || || || ||||| | || || ||||| ||| || |||| | || Sbjct 80533 ACCGATCAGCCGCTTCGCGTCAAACACTGTGTTCGTTGGGTTAGTCGCCACTTGGTTCTT 80474 Query 282730 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 282789 |||||||| |||| |||| | || | ||||| || | ||||| || || || || Sbjct 80473 CGCTGCATCACCAACCAGACGCTCAGCGTCTGTGAACGCTACATAACTCGGCGTCGTACG 80414 Query 282790 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || || || || || ||||| || ||||||||||||| || ||||||| ||||| Sbjct 80413 GTTTCCCTGGTCGTTAGCAATTATCTCAACTTTACCATGCTGGAATACACCGACACACGA 80354 Query 282850 AAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | | || || || | |||||| ||||||||| Sbjct 80353 ATATGTCGTACCAAGATCAATTCCAATAGCA 80323 Score = 131 bits (144), Expect = 1e-24 Identities = 270/398 (68%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| ||||| ||||||||||| ||||| | ||||| || || || || Sbjct 76313 TTGTCAACAGCAGATACATTCAGAATACCATTCGCATCTATGTCAAACGTCACCTCGATC 76254 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || || | |||||||||| || ||| || | || | ||||| ||| Sbjct 76253 TGAGGAACACCACGAGGAGCAGGTGGAATACCTGACAGCTCGAACTTGCCCAGCAGATTG 76194 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || ||||| || | | ||||||||||| || | || ||| || ||| || || Sbjct 76193 TTGTCTTTCGTCATCGTACGTTCACCCTCAAACACCTGAATAAGTACACCAGGCTGGTTG 76134 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||||| ||||| || | || | || | | || ||| || ||||| || | | || Sbjct 76133 TCTGAGTAAGTCGTGA--ACGTTTGAGTATGCTTCGTAGGGATCGTTGTATTCCGCTTAA 76076 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||| | ||| |||||||| || | ||| || || | |||| ||||||| Sbjct 76075 TCAACGCCGTCATCACACCCCCAGCTGTCTCAAGACCTAGTGACAATGGAGCCACATCAA 76016 Query 281715 CTAGGACAATA--TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAAT 281772 || ||| || | | | | |||| | | |||| |||||||| || |||| Sbjct 76015 GTA--ACAGTAAGTCCTTCACATCTTCAGACTTATCACCACTCAGAATAGCCGCCTGAAC 75958 Query 281773 AGCAGCACCATATGCAACAGCTTCATCAGGATTAACAG 281810 ||| |||||||| || ||||||||||| ||||||| || Sbjct 75957 AGCCGCACCATAAGCCACAGCTTCATCTGGATTAATAG 75920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739400649052848