Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq4550 89.7 2e-12 >seq4550 Length=173814 Score = 89.7 bits (98), Expect = 2e-12 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 188790 TTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTAT 188849 ||||||||||||| |||| |||||||| |||||| | ||| |||| ||| | ||||| Sbjct 22790 TTCAGGTAAAACACTATTGGCTCAAACTTTGGCTCAGTGCTTAGATGTGCCTTTCGCTAT 22731 Query 188850 CTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGT-AT 188908 | |||| || ||||||| | ||||||||||| || |||||| | ||| || || Sbjct 22730 TTGTGATTGTACAACTTTAACTCAGGCTGGTTATGTTGGCGAAGATATTGAATCAGTCAT 22671 Query 188909 TGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTAT 188968 || | ||| | |||| || ||| | || | ||| || ||| || || || | Sbjct 22670 CGC-TAAATTACTGCAAGATGCAAATTTCAATGTGGAACGTGCTCAACAAGGCATAGTGT 22612 Query 188969 ATATCGATGAAGTAGATAAAATT 188991 | | || |||||||| |||||| Sbjct 22611 TTTTAGACGAAGTAGACAAAATT 22589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591399512175104