Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024150.1 Length=31709 Score E Sequences producing significant alignments: (Bits) Value seq16058 360 4e-95 seq10679 143 5e-30 >seq16058 Length=1913 Score = 360 bits (398), Expect = 4e-95 Identities = 570/809 (70%), Gaps = 6/809 (1%) Strand=Plus/Plus Query 19063 TCTAGTTGATACTTATGTAAATATTGGTGCTAGATGGTCTTTGGATGCAATGGACACCGT 19122 ||| || ||| | || | || ||||| || || |||||| | || ||||||||| || Sbjct 56 TCTGGTCGATTCATACATCAACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGT 115 Query 19123 AAACCCATTTAACCATCATAGAAATGATGGACTATGTTATAGATCTCAACTGTTGGGAAA 19182 || ||||||||||| || | |||| ||| ||| | || | || || |||| || Sbjct 116 GAATCCATTTAACCACCACCGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAA 175 Query 19183 TGGGCGGTACTGT-AGTTTTCATATTCAAGTGCCGCAAAAATTTTTCGCGCTCAAAAACC 19241 ||| || || ||| ||| || || |||||||| |||||||| || || |||| |||| Sbjct 176 TGGCCGTTA-TGTGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACC 234 Query 19242 TTCTTCTTTTGCCCGGTTCTTATACTTATGAGTGGTCAATTAGAAAAGATGTAAATATGA 19301 | |||||| | || || || || || ||||||||| | ||||| | ||| || ||| Sbjct 235 TACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGG 294 Query 19302 TACTACAATCAACATTGGGCAATGATTTAAGGGTGGATGGTGCTTCCATAACTTTTACAA 19361 | || ||| | | || ||||| | || ||||||||| ||||| ||| || | Sbjct 295 TCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCA 354 Query 19362 GTGTTAACCTCTTTGCTAGCTTTTTTCCAATGGCCCATAATACATGTTCAACACTAGAAG 19421 | | ||||||| ||| | ||| || || ||||| || || || |||||| || |||| Sbjct 355 GCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAG 414 Query 19422 CAATGCTGAGAAATGATGTCAATGACCAATCTTTTAATGATTATCTATCCTCAGCGAATA 19481 | |||||| | || ||| |||||| || || || || || || || || |||| || | Sbjct 415 CCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACA 474 Query 19482 TGCTTTTTCCAATTCCAGCAAACGCAACACAAC-TTCCTATTTCCATTCCTTCTAGAAAC 19540 |||||| || || || || || ||||| |||| |||| |||||||| || ||| | ||| Sbjct 475 TGCTTTACCCCATCCCTGCCAATGCAAC-CAACATTCCAATTTCCATCCCATCTCGCAAC 533 Query 19541 TGGGCTGGATTTAGGGGGTGGAGTTTTACACGCCTTAAACAAAAAGAAACACCAGCTTTG 19600 ||||| | || ||||| ||| || || | || ||| || || || ||| || | Sbjct 534 TGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTT 593 Query 19601 GGGTCTCCTTTTGATCCTTATTTTACTTATTCAGGCAGTATCCCTTATTTGGATGGAACT 19660 || || || ||||| || || |||||| || ||| || || ||||||| ||| Sbjct 594 GGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACT 653 Query 19661 TTTTATCTTAGTCACACCTT-TAGAAGGCTTTCAATTATGTTTGATTCATCAGTTTCATG 19719 ||||| |||| ||||| || |||||| || || |||||||| || ||||| || Sbjct 654 TTTTACCTTAACCACACTTTCAAGAAGG-GCTCCATCATGTTTGACTCCTCAGTCAGCTG 712 Query 19720 GCCAGGAAATGATAGACTTCTTACACCAAATGAATTCGAAATCAAAAGGTATATTGATGG 19779 ||| || ||||| || || | | |||||||| || |||||||| | | | ||||| Sbjct 713 GCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGATGG 772 Query 19780 AGATGGTTACAATGTTGCTCAATGCAATATGACTAAAGATTGGTTTTTAGTGCAAATGTT 19839 || || |||||||| || |||||||| ||||| ||||| ||||| | || || ||| | Sbjct 773 GGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCT 832 Query 19840 GGCAAATTACAACATTGGTTTTCAAGGCT 19868 || || ||||||||||| | || |||| Sbjct 833 TGCCAACTACAACATTGGCTACCAGGGCT 861 >seq10679 Length=1604 Score = 143 bits (158), Expect = 5e-30 Identities = 582/909 (64%), Gaps = 25/909 (3%) Strand=Plus/Minus Query 23401 TTTAAACATGGATATGTGAAGCAAGCTTCAAAAATTTCAAACATGGATCTTTCAAATTTA 23460 |||| |||||| | ||| ||| || | || || || ||| |||| ||| | || | Sbjct 1343 TTTAGACATGGCTTCGTGCGGCAGGCATGCAAGATCTCCAACGTGGAGCTTACCAACCTG 1284 Query 23461 ATTTCATATATGGGAATTTTACATGAAAACAGATTGGGACAATCTGTTCTTCATAACACT 23520 |||| || ||||| ||||| ||||| ||| | | || || || || || | ||| Sbjct 1283 GTTTCTTACATGGGCATTTTGCATGAGAACCGGCTAGGGCAGAGCGTCCTGCACACCACC 1224 Query 23521 TTACAAGAAGAAGCCAGAAGAGATTACATCCGTGACACCATTTTTCTTTACCTTATATAT 23580 | ||| || ||| | | || |||||||| ||| | | || ||||| || Sbjct 1223 CTTAAAGGGGAGGCCCGCCGTGACTACATCCGAGACTGTGTCTACCTCTACCTCTGCCAT 1164 Query 23581 ACATGGCAAACCGCCATGGGAGTGTGGCAACAGTGTTTAGAAGAAGCCAATGTAAATGAA 23640 || ||||| || | |||||| ||||||||||||||||| ||||| || |||| || Sbjct 1163 ACCTGGCAGACTGGCATGGGTGTGTGGCAACAGTGTTTGGAAGAGCAGAACCTAAAAGAG 1104 Query 23641 CTTGTTAAAATTCTAACAAA-ATCCCGCCGGAATCTTTGGACTGGGTTTGATGAGCGAAG 23699 || | || | || || | ||||| | || ||||| || ||||||||||| | Sbjct 1103 CTGGACAAGCT-CTTGCAGAGATCCCTCAAAGCCCTGTGGACAGGTTTTGATGAGCGCAC 1045 Query 23700 CATTAATCATGAATTGGCGGGAATAATTTTCCCGCCAAAACTTGAAAAAG---CACTAAA 23756 | | || |||| | || || ||||| | | | | | | || Sbjct 1044 CGTCGCCTCGGACCTGGCAGACATCATCTTCCCCG---AGCGTCTCAGGGTTACTCTGCG 988 Query 23757 AAACGGTCTTCCAGATTTTACAAGTCAAAGTATGATGCAAAATTTTAGATCTTTTATATT 23816 |||||| || ||||| |||| || || || ||| | | || ||| | ||||| || | Sbjct 987 AAACGGCCTGCCAGACTTTATGAGCCAGAGCATGCTTAACAACTTTCGCTCTTTCATCCT 928 Query 23817 AGAAAGATCTGGAATACTTCCCGCCATGTGCAATGCCTTACCTTCAGACTTTGTTCCTAT 23876 ||| | || || || || || |||| ||| ||| | || || |||||||| ||| | Sbjct 927 GGAACGCTCCGGTATCCTGCCTGCCACCTGCTGTGCGCTGCCCTCCGACTTTGTGCCTCT 868 Query 23877 CACCTTCAAAGAATGCCCACCACCTCTTTGGTCATATACT--TACTTATTTCAACTCGCA 23934 ||||| | || |||||||| || || ||| | ||| ||| | || | || || Sbjct 867 CACCTACCGCGAGTGCCCACCGCCGCTATGG--AGCCACTGCTACCTGTTCCGCCTGGCC 810 Query 23935 AATTATTTTATGTATCATTCGGACATTGCTTATGATCTAAGTGGGGAGGGGGTATTGGAA 23994 || || | || || ||||| || | ||| | || || || || | ||||| Sbjct 809 AACTACCTCTCCTACCACTCGGATGTTATAGAGGATGTGAGCGGAGACGGTCTGCTGGAA 750 Query 23995 TGTTATTGTAGATGTAATCTATGCACCCCCCATCGTTGTTTTGCCACCAACAGCAATTTA 24054 || | || | || ||||| ||||| ||||| || | ||||| |||| | | || Sbjct 749 TGCCACTGCCGCTGCAATCTTTGCACACCCCACCGCTCCCTTGCCTGCAACCCCCAGTTG 690 Query 24055 CTAAGTGAAAGTCAGCTAATTAATAGCTTTGAAATGCAAGGGCCAAGCAATGATAAAAA- 24113 || || || | ||| | || | ||| || |||| || || |||| ||| | Sbjct 689 CTGAGCGAGACCCAGATCATCGGCACCTTCGAGTTGCAGGGTCCCAGCAGTGAAGGCGAG 630 Query 24114 -------CCCCGCCCCATCTT-TAAAACTAACGGCGGGAATGTGGACTTCCGCTTATTTG 24165 | ||| || | | ||||| || |||| ||||||| ||||| || || Sbjct 629 GGGTCTTCTCCGGGGCAGAGTCTGAAACTGACACCGGGGCTGTGGACCTCCGCCTACCTG 570 Query 24166 CGCAAATTTATACCAGAAGATTACCACCCTCATGAAATTAAATTTTATGAAGATCAAAGT 24225 ||||| ||| || || ||||||||||| |||| || | || ||||| || | ||| Sbjct 569 CGCAAGTTTCATCCCGAGGATTACCACCCCTATGAGATCAGGTTCTATGAGGACC--AGT 512 Query 24226 AACA--AACCAAAAGTTGAACCCACTGCCTGCGTAATCACACAGGAAACTATTTTAAGCC 24283 ||| || ||||| || | | | |||||||| ||||| |||| | | ||| | || Sbjct 511 CACATCCTCCCAAAGTCGAGCTCTCAGCCTGCGTCATCACCCAGGGAGCAATTCTGGCCC 452 Query 24284 AATTGCAAG 24292 ||||||||| Sbjct 451 AATTGCAAG 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101317054782096