Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4755 185 2e-41 seq4124 165 2e-35 seq3731 158 2e-33 seq11996 129 1e-24 >seq4755 Length=318840 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || || || || || || |||| Sbjct 279907 TACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAG 279848 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| || || || || || ||||||||||||| | ||||||||| |||| Sbjct 279847 ACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAG 279788 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || |||||||| || ||||| ||||| ||||| ||||| || ||| | || || | Sbjct 279787 GAATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAA 279728 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||| |||||||| || |||| ||||||||||||||||||||| Sbjct 279727 CTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || || || || || || |||| Sbjct 280135 TACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAG 280076 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| || || || || || ||||||||||||| | ||||||||| |||| Sbjct 280075 ACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAG 280016 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| ||||| ||||| ||||| || ||| | || || | Sbjct 280015 GAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAA 279956 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||||||| || |||| ||||| |||||||||||||| Sbjct 279955 CTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||| ||||| || || || || || || || |||| Sbjct 280363 TACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAG 280304 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| || || || || || ||||||||||||| | ||||||||| |||| Sbjct 280303 ACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAG 280244 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| ||||| ||||| ||||| || ||| | || || | Sbjct 280243 GAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAA 280184 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||||||| || |||| ||||| |||||||||||||| Sbjct 280183 CTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 183 bits (202), Expect = 6e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 || ||||||||||| || || || || || || || ||||| | | | | ||| || || Sbjct 280571 ACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280512 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 || || || ||||||||||||| | ||||||||| ||||| ||||| |||||||| || Sbjct 280511 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 280452 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| ||||| ||||| ||||| || ||| | || || ||||||||||| |||||||| Sbjct 280451 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 280392 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||||| |||||||||||||| Sbjct 280391 CCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq4124 Length=298687 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| | ||| | ||| || || ||||| || || || ||||||| | | ||| Sbjct 13605 ACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACC 13664 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| ||||| || || | | |||||| || ||||| || ||||| || Sbjct 13665 ATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 13724 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || || || ||||| |||||||| ||| |||| || || ||||| || || Sbjct 13725 ATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGAT 13784 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || ||||| ||||| ||||| |||||||| Sbjct 13785 CGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 >seq3731 Length=1156867 Score = 158 bits (174), Expect = 2e-33 Identities = 165/216 (76%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAG-TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 || ||||| ||| || || |||||||||| |||||| ||||| ||||| | |||| || Sbjct 1054742 CGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCC 1054683 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||| |||||||| || || | |||||||||||| || || || || || Sbjct 1054682 ATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTT 1054623 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| || || || || || |||||| |||||| ||| || ||||| | ||||| Sbjct 1054622 ATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTAT 1054563 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | || || ||||| |||||||| Sbjct 1054562 AGTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCAT 1054527 >seq11996 Length=10337 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| | ||| | |||||| || ||||| | || || ||||||| | | ||| ||||| Sbjct 10337 AACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTC 10278 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 | ||| | ||||| || || | | |||||| || ||||| || ||||| |||||||| Sbjct 10277 CAACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 10218 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTAT-CATTAGGTTCTACTTCCAAAGTTATCGTCT 82779 ||| || ||||| ||||| |||||||| | || |||| || || ||||| || || | || Sbjct 10217 AATTTTCGCTTTCACATTCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCT 10158 Query 82780 TGCCTGTCAACGT-CTTTACAAATATCTGCATT 82811 | || | ||| || ||| ||||| || |||||| Sbjct 10157 TCCCCGGCAATGTGCTTCACAAAGATTTGCATT 10125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981512104651272