Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024474.1 Length=45480 Score E Sequences producing significant alignments: (Bits) Value seq15970 89.7 1e-13 >seq15970 Length=4606 Score = 89.7 bits (98), Expect = 1e-13 Identities = 192/275 (70%), Gaps = 13/275 (5%) Strand=Plus/Minus Query 17858 CTGGCGCCTACGGGAGGCAGAAACAGCATCCGTTAC-CGCAACCATCTGCCCAGCCAAAA 17916 ||||||||||||| ||| ||| ||||||| |||||| || | | || |||| | | Sbjct 838 CTGGCGCCTACGGAAGGGAGACACAGCATTCGTTACTCGGAGCTGTC-GCCCCTGTACGA 780 Query 17917 CACCACCAAGCTCTTTTACGTGGACAACAAGCTGAGC-GACATCGACACGTACAACGAGG 17975 ||||||||| | | | || ||||||||| | || ||||||| | | ||| | Sbjct 779 TACCACCAAGTTGTATCTGGTTGACAACAAGTCGCGCGGACATCGCCTCCCTGAACTATC 720 Query 17976 AGGCCAACCACAGCAACTTTCGCACCACCGTCATCCACAACCAGAACCTAGACCCCGCCA 18035 || | ||||||||||||| | ||||| || | || ||| | | || |||| ||| Sbjct 719 AGAACGACCACAGCAACTTCCTGACCACGGTGGTGCAGAACAATGA-CTTTACCC--CCA 663 Query 18036 CGGCCGC---CACCGAAACCATCCAGCTGGACAATCGGTCGTGCTGGGGTGGCGATCTGC 18092 ||| || |||| | |||||| | | ||| | |||||| | ||||| || ||||| Sbjct 662 CGGAGGCTAGCACCCAGACCATCAACTTTGACGAACGGTCGCGATGGGGCGGTCATCTGA 603 Query 18093 ATACC-TCGTTCAAAACCAAC-TGCCCGAACGTGA 18125 | ||| || | | | |||||| ||||| ||||||| Sbjct 602 AGACCATCATGC-ACACCAACATGCCC-AACGTGA 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145371147213792