Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq16058 123 7e-24 >seq16058 Length=1913 Score = 123 bits (136), Expect = 7e-24 Identities = 549/847 (65%), Gaps = 43/847 (5%) Strand=Plus/Plus Query 19369 TATGAGTACATGAACAAGCGTGTTCCTCTGACAAATGTTGTGGACTTGTTCACAAATATT 19428 ||||||||||||||| ||| || | || | | || || | | || || ||| Sbjct 21 TATGAGTACATGAACGGGCGAGTGGTTTCCCCATCTCTGGTCGATTCATACATCAACATT 80 Query 19429 GGAGCTCGGTGGTCAGTAGACCAAATGGACAACGTTAATCCATTTAATCACCACAGAAAC 19488 || || ||||||| | |||| ||||||||| || ||||||||||| |||||| | || Sbjct 81 GGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACCGGAAT 140 Query 19489 TGGGGTCTCAAATACAGATCTCAACTGTTAGGAAATAGCAGATACTGT-CCGTTCCACAT 19547 || || ||| | || || | || ||| || | || ||| || |||||||| Sbjct 141 GCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTTCCACAT 199 Query 19548 TCAAGTTCCACAAAAGTATTTTGCAATCAAGAACTTGTTGTTGCTGCCTGGAACATACAC 19607 ||||| || ||||| | ||||| |||||||| | | | || ||||| | ||||| Sbjct 200 ACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCCTACAC 259 Query 19608 TTACGAATGGGTACTTC-GAAAGGATCCCAATATGGTTTTGCAGTCAAGT---CTTGGTA 19663 || || | || ||||| |||||| | || ||||| |||| |||| ||||| | Sbjct 260 CTATGAGT-GGAACTTCAGAAAGGGTGTGAACATGGTCCTGCA---AAGTTCCCTTGGAA 315 Query 19664 ACAACTT---AAGAGAGGAGGCTAAAATTACATTTTCTGAAG--TAAACCT-TATGGCAA 19717 | || | || ||| | ||||| || | |||| || | ||||| ||| || | Sbjct 316 ATGACCTCAGAACAGATGGTGCTAACAT--AAGTTTCACCAGCATCAACCTCTAT-GCCA 372 Query 19718 GCTTCATGCCAATGGATCACAATACAAGCAATCAA--CTTGAGTTGATGATGAGAAATGC 19775 |||| | || |||| |||||| || || |||| ||||| ||| || | || | Sbjct 373 CCTTCTTCCCCATGGCTCACAACAC-CGC-TTCAACTCTTGAAGCCATGCTGCGCAACGA 430 Query 19776 CACAAACGACCAAACATTCATGGATTACCT---TGGAGCCAAAAACTCTCTCTACAGTAT 19832 || || || || |||||| || ||||| || ||| ||| || ||| || Sbjct 431 TACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGC---TAACATGCTTTACCCCAT 487 Query 19833 ACCAGCTGGACAGCAGC--AGATTACTATAAACATTCCAGCCAGGACATGGGAAGGCATG 19890 || || | ||| | | ||| | || ||| ||| | | | |||| || | | Sbjct 488 CCCTGC--CAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTC 545 Query 19891 CGAGGGTGGTCATTCACTAGACTCAAGACAAAGGAAACTCCACAGCAAGGAGCTCAATAT 19950 | || ||||| ||||| |||||||| || ||||| |||||| | ||| | | Sbjct 546 AGGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTC 605 Query 19951 GACGTTGGCTTCAAGTATTCTGGTTCCATTCCTTACCTTGATGGAACATTCTACTTGAAC 20010 || |||| |||||||| || ||||| ||||| ||||| || || ||| | ||| Sbjct 606 GATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAAC 665 Query 20011 CATACATTCAGAAACATGAGTGTGTTGTTCGACACGTCAATTAACTGGCCAGGAAACGAC 20070 || || |||| || | |||| ||| | ||| | | |||||| || || ||| Sbjct 666 CACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGAC 725 Query 20071 AGATTAATGTCTCCTAACATGTTCGAGATAAAACGACCTCAGTCTGCTGACTCTGAAGGA 20130 || | ||||||| || ||| || || || || || ||| || |||||| Sbjct 726 AGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCG----CA--CTGTGGATGGGGAAGGA 779 Query 20131 TTTACGATGT--CCCAAAGTGACATCACTAAGGATTGGTTTCTTATCCAGATGGCTACAA 20188 ||| |||| ||||| | |||| || || || ||||| || | |||||| | | | Sbjct 780 --TACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCA 837 Query 20189 ACTACAA 20195 ||||||| Sbjct 838 ACTACAA 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139785609098496