Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024684.1 Length=32965 Score E Sequences producing significant alignments: (Bits) Value seq16058 159 7e-35 seq15970 113 9e-21 >seq16058 Length=1913 Score = 159 bits (176), Expect = 7e-35 Identities = 523/806 (65%), Gaps = 24/806 (3%) Strand=Plus/Plus Query 16531 ACATTGGGGCAAGGTGGTCTCTGGATGTGATGGATACAGTTAACCCGTTCAACCATCACA 16590 ||||||| || ||||||||||| || ||||| | || || || || ||||| ||| Sbjct 76 ACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACC 135 Query 16591 GAAACACGGGACTGAAGTACAGATCTCAATTGCTGGGCAACGGCAGGTACTGTGA-TTTC 16649 | || | || || ||| | || | |||||||| ||| | || |||| |||| Sbjct 136 GGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTTC 194 Query 16650 CACATTCAAGTGCCGCAGAAGTTTTTTGCCATCAAAAATTTGCTGCTCCTCCCTGGAACT 16709 ||||| |||||||| || || || ||||| |||| || | || || || ||||| | Sbjct 195 CACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCC 254 Query 16710 TACAACTACGAGTGGTATTTCAGGAAGGATCCCAACATGGTCTTGCAGTCTACCTTGGGA 16769 |||| ||| |||||| | ||||| |||| | ||||||||| |||| | || | ||| Sbjct 255 TACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGGA 314 Query 16770 AATGACCTTAGAGCAGACGGGGCAAGCATAACATACACTCAAATTAATTTGTATGTTAGT 16829 |||||||| ||| |||| || || | ||||| | ||| || || | |||| | Sbjct 315 AATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCACC 374 Query 16830 TTTTTCCCCATGAACTATGACACTCAGAGTGAGC---TGGAGCTCATGCTGAGGAACGCC 16886 || ||||||||| || | || | | | | | || ||| ||||||| | |||| Sbjct 375 TTCTTCCCCATG-GCTCACA-ACACCGCTTCAACTCTTGAAGC-CATGCTGCGCAACGAT 431 Query 16887 ACTAATGACCAGAACTTCAGTGACTATTTGGGAGCGGTGAACAACCTTTACCAGATTCCT 16946 || ||||| ||| |||| ||||| | || | |||| ||||||| || ||| Sbjct 432 ACCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCT 491 Query 16947 GCAGGGTCTAGTACGGTAGTAGTAAACATACCAGACAGATCCTGGGGGGCTTTCAGAGGC 17006 || | | | | | | ||| ||| | ||||| || ||||| ||| Sbjct 492 GCCAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGC 551 Query 17007 TGGAGTTTTACAAGACTAAAAGTGAGTGAAACTCCTCGAATTGGTGCCACACAAGACCCT 17066 ||| || || ||||| ||| | || ||||| |||| | || || Sbjct 552 TGGTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCC 611 Query 17067 AATTTCCAGTACTCTGGGTCTATCCCTTACTTAGATGGCACTTTCTATCTTAGCCACACT 17126 | ||| || ||||| ||||| || ||| | ||||||||||| || |||| ||||||| Sbjct 612 TACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACT 671 Query 17127 TTTCAAAGATGTTCCATCCAGTGGGACTCAAGCGTCCCTTGGCCCGGAAACGACAGAATG 17186 || | | | |||||| || ||||| ||| ||||| || || ||||| || Sbjct 672 TTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTG 731 Query 17187 CTGACTCCAAATTGGTTTGAAATTAAAAGACCAATCAACCAAGATGCAGAAGGGAATGAC 17246 || |||||||| ||||||||| || | || |||| ||||| || Sbjct 732 TTGTCTCCAAATGAGTTTGAAATCAAGCG------CACTGTGGATG-----GGGAAGGAT 780 Query 17247 ACCATG-----CAAAGTAATCTCACAAAAGATTTTTTCATGGTGCAGATGGCAGCTAGCT 17301 || ||| ||| | || | || ||||| | ||| |||| |||||| || | || Sbjct 781 ACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACT 840 Query 17302 ACAACCAAGGCTATCAGGGCTTTAAC 17327 ||||| ||||| ||||||||| || Sbjct 841 ACAACATTGGCTACCAGGGCTTTTAC 866 >seq15970 Length=4606 Score = 113 bits (124), Expect = 9e-21 Identities = 215/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 12717 ATTGACATGCTAAACAATGCGGTAGTGGAAAACTACTTAGAAGTAGGCAGACAGAAAGGT 12776 || ||| || | |||||||| | | || |||||| | ||| | ||||||||||| || Sbjct 405 ATCGACCTGATGAACAATGCCATCATTGACAACTACCTGGAAATTGGCAGACAGAATGGA 346 Query 12777 GTGCAAATATCTGACATAGGTGTGAAGTTCGACACAAGAAACTTTTCTCTGGGTAGAGAC 12836 |||| | |||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 345 GTGCTGGAAAGTGACATTGGTGTTAAGTTTGACACTAGAAATTTCAGGCTCGGGTGGGAC 286 Query 12837 CCCCTGACTTCATTGGTCACTCCGGGAAATTACACTTTCAAAGCTTTTCATCCAGACATT 12896 ||| ||| ||| | | || ||| ||||||| | || || ||||| |||||| Sbjct 285 CCCGAAACTAAGTTGATTATGCCAGGAGTCTACACTTATGAGGCATTCCATCCTGACATT 226 Query 12897 GTGTTGCTGCCTGGATGTGGAGTAGATTTTACCCACTCTAGAATAAATAACATGTTGGGA 12956 || ||||||||||| || || ||||| ||||| | || | | ||| || | || Sbjct 225 GTATTGCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGACTTAGCAACTTGCTTGGC 166 Query 12957 ATGAGGAAAAGATTTCCGTATGAACCAGGCTACGTTATAACATATGAAGACCTCGTAGGA 13016 || ||||| ||| ||| | | || | | || | |||||||| || | ||| Sbjct 165 ATCAGGAAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGTATGAAGATCTTGAAGGG 106 Query 13017 GGTAATATTCCGGCCCT 13033 ||| ||||||| ||||| Sbjct 105 GGTGATATTCCTGCCCT 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105335059291152