Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4842 118 3e-21 seq19834 86.0 1e-11 seq7176 86.0 1e-11 >seq4842 Length=69696 Score = 118 bits (130), Expect = 3e-21 Identities = 248/364 (68%), Gaps = 12/364 (3%) Strand=Plus/Minus Query 110684 ACTT-GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTA 110742 |||| || |||||||| | || |||||| |||||| |||||| | ||||| |||| Sbjct 44427 ACTTAGTCCCAATGTTGCGTGTATTCAACAGTACTGCACGATATGTTGACCAAGGGGGTA 44368 Query 110743 AGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAAT 110799 | | | ||| | |||||||| || || |||||||||||| | ||| | ||| | | Sbjct 44367 ACAAGCGCCCTGGAGCCTTTGCTATATACCTGGAACCTTGGCATCCTGATGTGTTTCAGT 44308 Query 110800 TCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA---GAGCACGTGATTTATTTT 110856 || ||||| | || |||||| || || |||| ||| | ||||| |||||||||| Sbjct 44307 TCATAGAAATGCGGAAAAATACTGG---TGCAGAAGAAATTCGTGCACGGGATTTATTTT 44251 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTC 110916 |||| | ||||| | || || || ||| || || || ||| | | |||| | | Sbjct 44250 TTGCACTCTGGATACCTGACTTGTTTATGCGTCGGGTCGAATCAAACGATAAGTGGACGC 44191 Query 110917 TTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACC 110976 | ||| ||||||| | ||| || | |||| | | || || | ||||||| | Sbjct 44190 TAATGGATCCTCATGAATGTCCAGGCTTGCCTGAACTGTGGGGTGAAAAATTTGAAGCTC 44131 Query 110977 TTTACGAAAAATATGAAAAAGAAGG-CAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT 111035 | || || ||||||||| ||||| | | | ||||| | || ||| |||||||| Sbjct 44130 TGTATGAGAAATATGAACGTGAAGGTCGTGGTAGACAAAC-AGTTAAAGCACAAGAACTA 44072 Query 111036 TGGT 111039 |||| Sbjct 44071 TGGT 44068 >seq19834 Length=1192 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 304913 GATAATGAAATTGCTGGAATTATGCAG-GCATCTCAAAGATCTGGCAGACCTTTAAAGGG 304971 ||||||||| || |||| ||| || ||| ||||| || || | || |||| Sbjct 1108 GATAATGAAGTTCCTGGG-TTACCCAAAGCAATTCAAAAGTCCGGACGCCCACTAAAATC 1050 Query 304972 TATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACG 305031 ||| | ||||| | || ||||| | ||||| |||||||||||||| ||||| ||||| Sbjct 1049 TATCAAACAACGACTCAAGGGTAAGGCTGGTCGCATTCGAGGTAATCTTATGGGGAAACG 990 Query 305032 TGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATT 305091 |||||| ||| || | | ||| |||||| | ||| || | ||| | | || || | Sbjct 989 TGTTGACTTTTCAGCTCGTACTGTCATCACAGCCGATCCTAATCTTAATTTAGATCAAGT 930 Query 305092 AGGAGTTCCAA 305102 ||| ||||||| Sbjct 929 AGGTGTTCCAA 919 >seq7176 Length=53165 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 304913 GATAATGAAATTGCTGGAATTATGCAG-GCATCTCAAAGATCTGGCAGACCTTTAAAGGG 304971 ||||||||| || |||| ||| || ||| ||||| || || | || |||| Sbjct 10156 GATAATGAAGTTCCTGGG-TTACCCAAAGCAATTCAAAAGTCCGGACGCCCACTAAAATC 10214 Query 304972 TATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACG 305031 ||| | ||||| | || ||||| | ||||| |||||||||||||| ||||| ||||| Sbjct 10215 TATCAAACAACGACTCAAGGGTAAGGCTGGTCGCATTCGAGGTAATCTTATGGGGAAACG 10274 Query 305032 TGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATT 305091 |||||| ||| || | | ||| |||||| | ||| || | ||| | | || || | Sbjct 10275 TGTTGACTTTTCAGCTCGTACTGTCATCACAGCCGATCCTAATCTTAATTTAGATCAAGT 10334 Query 305092 AGGAGTTCCAA 305102 ||| ||||||| Sbjct 10335 AGGTGTTCCAA 10345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186431919135128