Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4755 96.9 2e-15 seq4124 96.9 2e-15 >seq4755 Length=318840 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||||||||||| || ||||| ||| ||||| |||||||| || || Sbjct 280590 ACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 280531 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || |||| || || || ||||| || ||||| || ||||| | || Sbjct 280530 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280471 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || || |||| |||| || | ||||| |||| || | Sbjct 280470 AATTCCCTCCTTATCCTGGATCTTAGCTTTC-ACATTCTCAATAGTGTCACTTGGCTCAA 280412 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || ||||| ||||| || | || || ||||| ||||||||| Sbjct 280411 CTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCATA 280362 >seq4124 Length=298687 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 |||| ||| ||| || || |||||||| || || | || || | || ||||| ||| Sbjct 13618 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 13677 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || |||||||| || || || | || | ||||||||| || ||||||| Sbjct 13678 TTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTC 13737 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| ||||| || | || || || | |||||||| || || || Sbjct 13738 GCCTTCA-CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 13796 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||||||||||||| Sbjct 13797 CAATGTCTTCACAAAGATCTGCATA 13821 Score = 96.9 bits (106), Expect = 2e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 |||| ||| ||| || || |||||||| || || | || || | || ||||| ||| Sbjct 13846 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 13905 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || |||||||| || || || | || | ||||||||| || |||||| Sbjct 13906 TTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTC 13965 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||||| ||| ||| ||||| || | || || || | |||||||| || || || Sbjct 13966 GCTTTCA-CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 14024 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||||||||||||| Sbjct 14025 CAATGTCTTCACAAAGATCTGCATA 14049 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 |||| ||| ||| || || |||||||| || || | || || | || ||||| ||| Sbjct 14074 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 14133 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || |||||||| || || || | || | ||||||||| || |||||| Sbjct 14134 TTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTC 14193 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||||| ||| ||| ||||| || | || || || | ||||| || || || || Sbjct 14194 GCTTTCA-CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGT 14252 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||||||||||||| Sbjct 14253 CAATGTCTTCACAAAGATCTGCATA 14277 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 |||| ||| ||| || || |||||||| || || | || || | || ||||| ||| Sbjct 14302 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 14361 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || |||||||| || || || | || | ||||||||| || |||||| Sbjct 14362 TTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTC 14421 Query 33667 TGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| ||||| || | || || || | |||||||| || || || Sbjct 14422 GCCTTCA-CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 14480 Query 33726 TAACGTTTTTACAAAGATCTGCATA 33750 || || || ||||||||||||||| Sbjct 14481 CAATGTCTTCACAAAGATCTGCATA 14505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328603655708160