Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4755 98.7 2e-15 seq4124 96.9 8e-15 seq3731 89.7 1e-12 seq11996 84.2 5e-11 >seq4755 Length=318840 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || || || || || || ||||| ||||||||||| || ||| | Sbjct 280366 CAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG---T 280422 Query 206230 GACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| | || || ||||| ||||| || || || || |||||| || || Sbjct 280423 GACACTATTGAGAATGTGAAAGC-TAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCA 280481 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| | | ||||| || || |||||| |||| ||||| | |||||| | || ||||| Sbjct 280482 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 280541 Query 206349 CGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | |||| || ||||| ||||| ||| | || || |||||||| Sbjct 280542 CATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGA 280584 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || || || || || || ||||| ||||||||||| || ||| | Sbjct 279910 CAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG---T 279966 Query 206230 GACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| | || || ||||| ||||| || || || || |||||| || || Sbjct 279967 GACACTATTGAGAATGTGAAAGC-TAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCA 280025 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| | | ||||| || || |||||| |||| ||||| | |||||| | || ||||| Sbjct 280026 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 280085 Query 206349 CGTCCAGAAAGAGTCTACTCTTCAC 206373 | |||| || ||||| ||||| ||| Sbjct 280086 CATCCAAAAGGAGTCGACTCTACAC 280110 Score = 89.7 bits (98), Expect = 1e-12 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || || || || || || ||||| ||||||||||| || ||| | Sbjct 280138 CAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG---T 280194 Query 206230 GACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| | || || ||||| ||||| || || || || |||||| || || Sbjct 280195 GACACTATTGAGAATGTGAAAGC-TAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCA 280253 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| | | ||||| || || |||||| |||| ||||| | |||||| | || ||||| Sbjct 280254 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 280313 Query 206349 CGTCCAGAAAGAGTCTACTCTTCAC 206373 | |||| || ||||| ||||| ||| Sbjct 280314 CATCCAAAAGGAGTCGACTCTACAC 280338 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||| || || | ||| ||||| ||||| || |||| || ||||||| |||||| Sbjct 280584 TCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 280525 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||||||||| || || ||||| | ||||||||| Sbjct 280524 GCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGA 280479 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||||||| || || || || || || ||||| ||||||||||| || ||| | Sbjct 279682 CAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAG---T 279738 Query 206230 GACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| | || || ||||| ||||| || || || || || ||| || || Sbjct 279739 GACACTATTGAGAATGTGAAAGC-TAAGATCCAGGATAAGGAGGGGATTCCTCCCGATCA 279797 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| | | ||||| || || |||||| |||| ||||| | |||||| | || ||||| Sbjct 279798 ACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAA 279857 Query 206349 CGTCCAGAAAGAGTCTACTCTTCAC 206373 | |||| || ||||| ||||| ||| Sbjct 279858 CATCCAAAAGGAGTCGACTCTACAC 279882 >seq4124 Length=298687 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || |||||||| ||||| || || | |||| Sbjct 13817 CAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGTGAC 13758 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || |||||||| |||||||| ||| || ||| ||| Sbjct 13757 ACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAACAA 13698 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || || |||||||||||||| | || || | || |||||| | Sbjct 13697 CGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACATT 13638 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||| | ||||||||| | | ||||| Sbjct 13637 CAGAAGGAGTCAACTTTACACCTTGTTCTTCGTCTTCG 13600 Score = 96.9 bits (106), Expect = 8e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || ||||| ||||| || ||||| || || | |||||| | || || ||||| Sbjct 14708 ACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAGTGACACGATTGAGAATGTGAAAGCG 14649 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| || ||||| |||||||| ||| || ||| ||| | | || ||||| || || Sbjct 14648 AAA-ATCCAAGATAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTCGCTGGTAA 14590 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||||||| | || || | || |||||| | ||||| ||||||||| | || Sbjct 14589 ACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACATTCAGAAGGAGTCTACTTTACA 14530 Query 206373 CCTTGTT 206379 ||||||| Sbjct 14529 CCTTGTT 14523 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || |||||||| ||||| || || | |||| Sbjct 14045 CAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGTGAC 13986 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| |||||||| ||| || ||| || Sbjct 13985 ACGATTGAGAATGTGAAAGCGAAA-ATCCAAGATAAAGAAGGTATTCCTCCTGACCAACA 13927 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || || |||||||||||||| | || || | || |||||| | Sbjct 13926 ACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACAT 13867 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||| | ||||||||| Sbjct 13866 TCAGAAGGAGTCAACTTTACACCTTGTT 13839 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| ||||| || || | |||| Sbjct 14273 CAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGTGAC 14214 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| ||| || ||||| |||||||| ||| || ||| || Sbjct 14213 ACGATTGAGAATGTGAAAGCGAAA-ATCCAAGATAAAGAAGGTATTCCTCCTGACCAACA 14155 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || ||||| || || |||||||||||||| | || || | || |||||| | Sbjct 14154 ACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACAT 14095 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||| | ||||||||| Sbjct 14094 TCAGAAGGAGTCAACTTTACACCTTGTT 14067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || |||||||| ||||| || || | |||| Sbjct 14501 CAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGTGAC 14442 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || || ||||| |||||||| ||| || ||| ||| Sbjct 14441 ACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAACAA 14382 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || || |||||||||||||| | || || | || |||||| | Sbjct 14381 CGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACATT 14322 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| ||||| ||| | ||||||||| Sbjct 14321 CAGAAGGAGTCAACTTTACACCTTGTT 14295 >seq3731 Length=1156867 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || ||||| || || | ||||| || | |||| Sbjct 1054530 CAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCTGCTGAT 1054589 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| |||| || || ||| || ||||| ||||| || || || || || Sbjct 1054590 ACAATTGAAGCAGTTAANGCTAAA-ATCCAAGATAAAGAGGGTATCCCACCAGATCAACA 1054648 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || || || ||||||||||||| || | | || || ||| | Sbjct 1054649 ACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTATAACAT 1054708 Query 206352 CCAGAAAGAGTCTACTCTTCACCTT-GTTTTGAGACTTCG 206390 ||| |||| ||||| ||||| ||| ||| | ||||||| Sbjct 1054709 ACAGTAAGAATCTACACTTCATCTTGGTTCTTCGACTTCG 1054748 Score = 84.2 bits (92), Expect = 5e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAAC-AAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||||||| | ||| ||| ||||| ||||| |||| ||| | |||||||||| | || Sbjct 1054748 CGAAGTCGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGT 1054689 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||| || || || || || ||||| ||||||||| Sbjct 1054688 TCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGA 1054643 >seq11996 Length=10337 Score = 84.2 bits (92), Expect = 5e-11 Identities = 99/133 (74%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| |||||||| |||||||| ||| || ||| ||| | | || ||||| Sbjct 10206 AAAGCGAAA-ATTCAAGATAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATTCGC 10264 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || | |||||||||||||| | || || | || |||||| ||||| |||||||| Sbjct 10265 TGGTACACAGTTGGAAGATGGTCGTACGTTATCTGACTACAACACTCAGAAGGAGTCTAC 10324 Query 206367 TCTTCACCTTGTT 206379 | | ||||||||| Sbjct 10325 TTTACACCTTGTT 10337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181441521205208