Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq4755 116 4e-21 seq4124 98.7 9e-16 seq3731 91.5 1e-13 >seq4755 Length=318840 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | ||||| ||||| ||||||||||| || || || ||| || Sbjct 279887 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 279828 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||||| ||| |||||||| ||||| || || || ||||| Sbjct 279827 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTGG 279768 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | ||| || | ||||| ||||| | || | ||| ||| Sbjct 279767 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 279708 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||| || |||||||| Sbjct 279707 CCAGTCAGAGTCTTTACAAATATCTGCAT 279679 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | ||||| ||||| ||||||||||| || || || ||| || Sbjct 280115 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280056 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||||| ||| |||||||| ||||| || || || ||||| Sbjct 280055 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 279996 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | ||| || | ||||| ||||| | || | ||| ||| Sbjct 279995 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 279936 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | || |||||||| Sbjct 279935 CCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| | ||||| ||||| ||||||||||| || || || ||| || Sbjct 280343 ACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCC 280284 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||||| ||| |||||||| ||||| || || || ||||| Sbjct 280283 AGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGG 280224 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||||| | || | ||| || | ||||| ||||| | || | ||| ||| Sbjct 280223 ATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCTTA 280164 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | || |||||||| Sbjct 280163 CCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || ||||| || | | ||||| ||||| ||||||||||| || || || | Sbjct 280577 CGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCA 280518 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| ||||| | | |||||| ||| |||||||| ||||| || || || ||| Sbjct 280517 TCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTA 280458 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | ||| || | ||||| ||||| | || | | Sbjct 280457 TCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATC 280398 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||||||| || | || |||||||| Sbjct 280397 GTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq4124 Length=298687 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| | ||||| |||||| | ||||||||| | Sbjct 14539 GACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCG 14598 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||| ||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 14599 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCACA 14658 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||| || || | ||| | ||| || || |||| ||| || Sbjct 14659 TTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTA 14718 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 14719 ACGAAAATCTGCAT 14732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || |||||||||||||| | ||||| |||||| | ||||||||| | Sbjct 13625 TTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAG 13684 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| ||||| || ||||| || ||||||||||| |||||| |||| Sbjct 13685 CGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGAATTTTCGCCTTCA 13744 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||| || || | || | ||| || || |||| || | Sbjct 13745 CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCT 13804 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 13805 TCACAAAGATCTGCAT 13820 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| || |||||||||||||| | ||||| |||||| | ||||||||| | Sbjct 13853 TTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAG 13912 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| ||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 13913 CGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTCGCTTTCA 13972 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | ||||| || || | || | ||| || || |||| || | Sbjct 13973 CATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCT 14032 Query 132108 TTATGAAAATCTGCAT 132123 | | || |||||||| Sbjct 14033 TCACAAAGATCTGCAT 14048 >seq3731 Length=1156867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||| || ||||| ||||| | ||| | |||||| || ||||| || | | Sbjct 1054720 GATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTGTTTGCCAGCA 1054661 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || ||||| ||||||||||| || || || |||||||| ||||| || ||| Sbjct 1054660 AAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGATTTTAGCNTT-AAC 1054602 Query 132050 TG-TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || ||| | ||||| | ||||| ||||| | ||| | ||||| || || || ||||| Sbjct 1054601 TGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCGTAAGTGTTTT 1054542 Query 132109 TATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 1054541 CACAAAAATCTGCATG 1054526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476461973033280