Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_025962.1 Length=31735 Score E Sequences producing significant alignments: (Bits) Value seq16058 104 5e-18 seq15970 80.6 5e-11 >seq16058 Length=1913 Score = 104 bits (114), Expect = 5e-18 Identities = 502/788 (64%), Gaps = 28/788 (4%) Strand=Plus/Plus Query 14722 AATATAGGGGCGAGATGGTCCCCGGACGTAATGGACACGCAAAACCCCTTCAACCACCAT 14781 || || || || || ||||| | ||| |||||||| || || || |||||||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 14782 AGAAACCTAGGTCTGAAATATCGCTCCCAGCTGCTGGGGAACGGCAGATAC-TGCCGGTT 14840 | || || || || || ||| ||| ||||| || ||| | || |||| || Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTATGTGCCT-TT 193 Query 14841 CCACATCCAGGTTCCTCAGAAGTTCTTCGCGATTAAAAACTTGCT-CTTGTGTCCGGGTA 14899 |||||| || || ||||| || ||||| || | || ||| | || ||| | | || | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 14900 CATACAACTACGAGTGGTACTTCAGAAAGGACCCGAATATGGTTTTACAAAGCACCCTGG 14959 | |||| ||| |||||| |||||||||||| ||| ||||| | ||||| |||| | Sbjct 254 C-TACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTG 312 Query 14960 GAAACGACCTGAGGGCGGACGGTGCCGTCATTACGTATACGAGCGTGAACTTGTACGCTT 15019 |||| ||||| || | || ||||| ||| | | || ||| | ||| | || || Sbjct 313 GAAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCA 372 Query 15020 CTTTCTTTCCTATGGCGTACGAGACCGTGGGGGAGCTGGAACTCATGCTCAGGAACGCTA 15079 | ||||| || ||||| || | |||| || ||| |||||| | |||| || Sbjct 373 CCTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCAACGATA 432 Query 15080 CCAACGACCAGAATTTCTCTGACTATCTCGGAGCAGTGAACAATCTGTATCAGATTCCCG 15139 |||| || ||| ||| ||||| ||| |||| |||| || || | || || | Sbjct 433 CCAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCTG 492 Query 15140 CAGGGGCAACGTCTGTTGTAGTCAACGTTCCTGACAGATCG----TGGGGCGCCTTTAGG 15195 | ||||| || ||| | | | || ||| |||| ||||| ||| Sbjct 493 CCAATGCAACCAACATT----CCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGG 548 Query 15196 GGGTGGACTTTCACTCGCATC-AAGCAAAGCGAGACGCCTGTTATCGCCTCCACAAAG-- 15252 || ||| | ||||| | || || | ||| ||||| || ||| | | | | | Sbjct 549 GGCTGGTCCTTCACCAGACTCAAAACCAAG-GAGACTCC----ATCTCTTGGATCAGGGT 603 Query 15253 --GACCCGAACTTCACGTACTCCGGAAGCATTCCCTTATTGGATGGAACATGCTACTTGT 15310 || || ||||| || || ||| ||||||| ||||||| || | ||| | Sbjct 604 TCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTA 663 Query 15311 CGCACACTTTCAACAGGGTGTCCATTCAGTGGGACTCCAGCGTCCCGTGGCCCGGTAACG 15370 ||||||||||| | || ||||| || |||||| ||| ||||| || || | Sbjct 664 ACCACACTTTCAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATG 723 Query 15371 ACAGGCTGCTGACCCCTAACTGGTTTGAGGTGAAAAGGAGCCTAGAGAATGACCCCGAGG 15430 |||||||| || | || || |||||| | || | || | | ||| || | Sbjct 724 ACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAA---GCGCACTGTGGATG---GGGAAG 777 Query 15431 GCTACACAACCAGCCAGTCCACTATAACGAAAGACTGGTTCATGGTGCAGATGGCAGCAA 15490 | |||| ||| | || || || |||||||||||| |||| |||||| || | Sbjct 778 GATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCA 837 Query 15491 ATTACAAC 15498 | |||||| Sbjct 838 ACTACAAC 845 >seq15970 Length=4606 Score = 80.6 bits (88), Expect = 5e-11 Identities = 169/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 10972 GATAGATCTCATGAACAATGCTATATTAAACAACTACCTTGCCAATGGACGGCAGAATGG 11031 ||| || || ||||||||||| || | |||||||||| | | ||| | |||||||| Sbjct 406 GATCGACCTGATGAACAATGCCATCATTGACAACTACCTGGAAATTGGCAGACAGAATGG 347 Query 11032 CGTGCTTGTGTCGGACATAGGTGTGAAAATAGACACAAGAAATTTTGCTCTAGGCCAGGA 11091 ||||| | ||||| ||||| || | ||||| |||||||| || || ||| Sbjct 346 AGTGCTGGAAAGTGACATTGGTGTTAAGTTTGACACTAGAAATTTCAGGCTCGGGTGGGA 287 Query 11092 TCCCGTTACCACCTTGGTCACTCCAGGCAAATACACATACAAAGCGTTTCATCCCGATAT 11151 |||| || | ||| | | ||||| ||||| || | || || ||||| || || Sbjct 286 CCCCGAAACTAAGTTGATTATGCCAGGAGTCTACACTTATGAGGCATTCCATCCTGACAT 227 Query 11152 CATCTTGCTGCCAAACTGCGCCGTGGACTTTAGCCAGTCGCGTCTCAGTAACATGCTGGG 11211 | |||||||| |||| || ||||||| | || || || ||| |||| || Sbjct 226 TGTATTGCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGACTTAGCAACTTGCTTGG 167 Query 11212 GATAAGAAAGAG 11223 || || ||||| Sbjct 166 CATCAGGAAGAG 155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101400230034672