Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq16338 87.8 6e-14 seq16010 87.8 6e-14 seq3760 87.8 6e-14 seq309 87.8 6e-14 >seq16338 Length=1355 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| | |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | Sbjct 97 GGCCGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGAT 156 Query 2828 CCCGGG 2833 |||||| Sbjct 157 CCCGGG 162 >seq16010 Length=1814 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| | |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | Sbjct 231 GGCCGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGAT 172 Query 2828 CCCGGG 2833 |||||| Sbjct 171 CCCGGG 166 >seq3760 Length=566214 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| | |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | Sbjct 66573 GGCCGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGAT 66514 Query 2828 CCCGGG 2833 |||||| Sbjct 66513 CCCGGG 66508 >seq309 Length=1562 Score = 87.8 bits (96), Expect = 6e-14 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| | |||||||||||||||||||| |||||||||||||||||| ||||| ||||| | Sbjct 1221 GGCCGGAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGAT 1280 Query 2828 CCCGGG 2833 |||||| Sbjct 1281 CCCGGG 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15845257803960