Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3731 100 3e-16 >seq3731 Length=1156867 Score = 100 bits (110), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||||||||| | ||||| |||||| | || || ||| | || ||| | ||||| || || Sbjct 1054523 CAACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGA-GC 1054581 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | ||||| || || ||| || ||||| |||||||||||||| || || | Sbjct 1054582 CTGCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAG 1054641 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATT 25349 |||| ||| | || |||| | ||||||||||| ||||||| |||| ||| || | Sbjct 1054642 ATCAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACT 1054701 Query 25350 ACAATATTCAAAAAGAATCCACCATTCAT 25378 | || || || ||||||| || ||||| Sbjct 1054702 ATAACATACAGTAAGAATCTACACTTCAT 1054730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444955040943360