Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21]
25,048 sequences; 402,743,189 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq4755 134 1e-26
seq4124 131 2e-25
>seq4755
Length=318840
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| |||| || ||||||||| |||||||| || | |
Sbjct 280133 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280074
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||||||||||||| ||||| || || || || || || | ||||
Sbjct 280073 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280014
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||| ||| |||||| |||| | | | | ||||| || | || ||
Sbjct 280013 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279954
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| || ||||| ||||| |||| ||| |||||||||||||||||
Sbjct 279953 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| |||| || ||||||||| |||||||| || | |
Sbjct 280361 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280302
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||||||||||||| ||||| || || || || || || | ||||
Sbjct 280301 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280242
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||| ||| |||||| |||| | | | | ||||| || | || ||
Sbjct 280241 ATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 280182
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| || ||||| ||||| |||| ||| |||||||||||||||||
Sbjct 280181 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||| | | | |||||| |||| || ||||||||| |||||||| || | |
Sbjct 279905 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 279846
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||||||||||||| ||||| || || || || || || | ||||
Sbjct 279845 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 279786
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | |||||| ||| |||||| |||| | | | | ||||| || | || ||
Sbjct 279785 ATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACT 279726
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737
|||| || ||||| ||||| |||| ||| || |||||||||||||||
Sbjct 279725 TCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584
|||||||| || | || ||||||||| |||||||| || | ||| || || | ||
Sbjct 280574 AACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCC 280515
Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644
|||||||||||||| ||||| || || || || || || | ||||| | |||||| |||
Sbjct 280514 TCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCC 280455
Query 35645 ATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTT 35704
|||||| |||| | | | | ||||| || | || || |||| || |||||
Sbjct 280454 TGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTC 280395
Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| |||| ||| |||||||||||||||||
Sbjct 280394 TTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363
>seq4124
Length=298687
Score = 131 bits (144), Expect = 2e-25
Identities = 171/234 (73%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | || | ||||| ||| |||||| ||||||||||| || |
Sbjct 14506 CCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAT 14565
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| ||| ||||| || |||||||| || || ||||| | ||||
Sbjct 14566 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14625
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || || || ||| ||| || |||| | | | | |||||| || | || ||
Sbjct 14626 ATACCTTCTTTATCTTGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14684
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTG 35742
||||| ||| ||||| || ||||||||||| || || || ||||||||||||||
Sbjct 14685 CTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCATTCTGTG 14738
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | || | ||||| || |||||| ||||||||||| || |
Sbjct 14278 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14337
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| ||| ||||| || |||||||| || || ||||| | ||||
Sbjct 14338 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14397
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | || || || ||| || ||||| | | | | |||||| || | || |||
Sbjct 14398 ATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14457
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct 14458 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | || | ||||| || |||||| ||||||||||| || |
Sbjct 13822 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13881
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| ||| ||||| || |||||||| || || ||||| | ||||
Sbjct 13882 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13941
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || || || ||| ||| || |||| | | | | |||||| || | || ||
Sbjct 13942 ATACCTTCTTTATCTTGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14000
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| |||||||| || |||||||| || |||||||| ||||||||
Sbjct 14001 CTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048
Score = 118 bits (130), Expect = 1e-21
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593
||||| || |||||| ||||||||||| || | || || || | || |||| |||
Sbjct 13618 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGT 13677
Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653
||||| || |||||||| || || ||||| | ||||| | || ||| | ||| |||
Sbjct 13678 TTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATAC-CTTCTTTATCTTGAATTTT 13736
Query 35654 TG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712
| ||||| | | | | |||||| || | || ||||||| |||||||| || |||||
Sbjct 13737 CGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 13796
Query 35713 CAAAGTTTTCACAAATATCTGCAT 35736
||| || |||||||| ||||||||
Sbjct 13797 CAATGTCTTCACAAAGATCTGCAT 13820
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||||||| | | || | ||||| || |||||| ||||||||||| || |
Sbjct 14050 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14109
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || | || |||| ||| ||||| || |||||||| || || ||||| | ||||
Sbjct 14110 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14169
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688
| | || || || ||| ||| || |||| | | | | |||||| || | || ||
Sbjct 14170 ATACCTTCTTTATCTTGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14228
Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
||||| ||||| || || |||||||| || |||||||| ||||||||
Sbjct 14229 CTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450652456523840
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