Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4124 105 7e-18 seq4755 98.7 1e-15 >seq4124 Length=298687 Score = 105 bits (116), Expect = 7e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||||| || || ||||| |||||||||||||| | |||| | || || || Sbjct 14524 ACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTC 14582 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | |||||| || || || |||||||| || || || || || || |||||||| ||||| Sbjct 14583 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 14642 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||||| ||| || || | ||||| | || || || | ||||| || || Sbjct 14643 GATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTT 14702 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGT 134718 || || ||||| ||||||||||| |||||| ||| Sbjct 14703 TCCCGTCAAAGTCTTAACGAAAATCTGCATTCTGT 14737 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTC 134563 || ||||||| || || ||||| |||||||||||||| | |||| | || || || Sbjct 13612 ACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACG-TACGACCATCTTC 13670 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | |||||| || || || |||||||| || || || || || || |||||||| ||||| Sbjct 13671 CAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTG 13730 Query 134624 AATTTT 134629 |||||| Sbjct 13731 AATTTT 13736 >seq4755 Length=318840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || |||| ||||| ||||| | ||| || || || |||||||| ||||||||||| | | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| || || || ||||| || || ||||| || ||||| || |||||||| || Sbjct 280529 AA-AGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280471 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || ||| || || | ||||| | || || Sbjct 280470 AATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 280411 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | |||||| || ||||| || | ||| || || || || ||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | |||||| || || |||||||| ||||||||||| | ||| ||| | Sbjct 279896 AGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTGCG 279838 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || ||||| || |||||||| || || || || Sbjct 279837 ACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTC 279778 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||| || || | ||||| | || || || | ||| Sbjct 279777 CTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGT 279718 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || ||||| || | ||| || || || || |||||| Sbjct 279717 AATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | |||||| || || |||||||| ||||||||||| | ||| ||| | Sbjct 280124 AGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTGCG 280066 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || ||||| || |||||||| || || || || Sbjct 280065 ACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTC 280006 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||| || || | ||||| | || || || | ||| Sbjct 280005 CTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGT 279946 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || ||||| || | ||| || || || || ||||| Sbjct 279945 AATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || || | ||| | |||||| || || |||||||| ||||||||||| | ||| ||| | Sbjct 280352 AGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTGCG 280294 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || || ||||| || || ||||| || ||||| || |||||||| || || || || Sbjct 280293 ACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTC 280234 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||| || || | ||||| | || || || | ||| Sbjct 280233 CTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGT 280174 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || ||||| || | ||| || || || || ||||| Sbjct 280173 AATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505240159760960