Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5310 280 2e-70 seq4842 91.5 2e-13 >seq5310 Length=161011 Score = 280 bits (310), Expect = 2e-70 Identities = 519/752 (69%), Gaps = 17/752 (2%) Strand=Plus/Plus Query 39488 CAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCT 39547 ||||||||||| || | | ||||| | || || | |||||||||| |||||| Sbjct 62848 CAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGC 62907 Query 39548 ACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGC--AATAAA-TGT 39604 || ||||| | || ||||| | || | | || | || | ||||| || Sbjct 62908 ACCGCCTCCTTCATAATCGACT---CAACGCGAACCCTAGAAGGCTTTTTAATAATGTGC 62964 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 ||||||| | || |||||||||||||||| || || |||||||| ||||| || ||| Sbjct 62965 TTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTA 63024 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 ||| | | ||||||||| || || ||||| || ||||||||||| || || || Sbjct 63025 CTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTG 63084 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCC----GTA-AC 39779 || || || || | ||||||||||||||||| ||||| | | ||| | ||| || Sbjct 63085 CCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTAGAC 63144 Query 39780 TT-GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATT 39838 || | |||| | ||||| | | |||||| | |||||| ||| |||||||| | Sbjct 63145 TTAGAATCACCA---ATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAG- 63200 Query 39839 GTTTCT-ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTAT 39897 ||| || |||||||| || ||| | | | |||| | | ||||| | ||| ||||| || Sbjct 63201 GTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTTGATATACGTATCGAT 63260 Query 39898 TAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || ||| |||||||| ||||| || || || || || ||||| | || |||||||| Sbjct 63261 TAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACA 63320 Query 39958 TCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 | | || | || ||||||||| || ||| | |||| || ||||| ||||| Sbjct 63321 GCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTAT 63380 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077 ||||||||| || ||||| |||||||| |||| | ||||||| ||| | | Sbjct 63381 TCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATGACGTTCCCCAACCTT 63440 Query 40078 CAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGA 40137 | | | ||| | ||| ||||| || | ||| || ||||| | ||||| || || Sbjct 63441 AAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGA 63500 Query 40138 CGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| | ||||||||||| | | ||| |||||| |||||| ||| || |||| |||||| Sbjct 63501 AGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAA 63560 Query 40198 TCTATTTGGATTTTTTGCAAGGATGGGTTCCA 40229 | | ||| ||| | ||| | |||||||| Sbjct 63561 ACGGTGTGGGTTTGGTTTAAGCAAGGGTTCCA 63592 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||| ||||||||||| || || || ||||| || || |||||||| | ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 39388 CATGAAATCAAACGGATTA 39406 ||| |||||||| |||||| Sbjct 62714 CATAAAATCAAAAGGATTA 62732 >seq4842 Length=69696 Score = 91.5 bits (100), Expect = 2e-13 Identities = 169/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 69808 CCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATA 69867 ||||| |||| ||||| || || | || ||| | || |||||||||| | | Sbjct 44523 CCATTTGATTCCCCATTCGTCCCGGCTATGTAAGTCCCAAGACTGCGAATATTATGGACA 44582 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 || || || || || || ||||||| || | ||||| || | |||||||| Sbjct 44583 TTTACTCCAATACCCCCAGCATTTTTAGATATAATGGCACATTCCTTTAGAGTGTCATAA 44642 Query 69928 ATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGT 69987 ||||| ||||||||||||||| |||| | | ||| || || || || | ||| | | Sbjct 44643 ATACCTTCTATGCTATCATCTTTCATAGTGATAAGGAAGCAACTTGAAAGTTGTGGTTTC 44702 Query 69988 ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGA 70047 ||||| | |||||| | || || || || || || |||||||||||||| | || Sbjct 44703 GGTGTTCCAGAATTAAAAAGAGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATTAGG 44762 Query 70048 TTGTATGT 70055 || ||||| Sbjct 44763 TTATATGT 44770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686693728854720