Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_027705.1 Length=33090 Score E Sequences producing significant alignments: (Bits) Value seq16058 459 6e-125 seq15970 196 1e-45 seq10679 104 5e-18 >seq16058 Length=1913 Score = 459 bits (508), Expect = 6e-125 Identities = 698/991 (70%), Gaps = 2/991 (0%) Strand=Plus/Plus Query 20603 AACACCTATGACTACATGAACGGAAAACTTCCAGCCGCTGGTTTAATTGATAGCTACGTG 20662 ||||||||||| ||||||||||| | | || | | | | ||| ||| | Sbjct 15 AACACCTATGAGTACATGAACGGGCGAGTGGTTTCCCCATCTCTGGTCGATTCATACATC 74 Query 20663 AACGTGGGCTCCCGGTGGTCCCTCGATGTGATGGATAATATTAACCCTTTTAATCATCAC 20722 ||| | ||| || ||||||| || || ||||| ||| | || || ||||| || ||| Sbjct 75 AACATTGGCGCCAGGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCAC 134 Query 20723 CGCAACGCCGGCCTACGCTACCGATCTCAAATTCTTGGCAACGGAAGATATTGTAAATTT 20782 || || || |||||||||||||| || |||| ||||| || | || ||| ||| Sbjct 135 CGGAATGCTGGCCTACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTT 193 Query 20783 -CACATTCAAGTTCCCCAGAAATTCTTCGCTATTCGCAACTTGCTTCTGCTTCCGGGAAC 20841 ||||| ||||| || || |||||||| ||| | ||| | ||||| || || || | Sbjct 194 CCACATACAAGTGCCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTC 253 Query 20842 ATACACGTATGAGTGGTCTTTCCGCAAAGACGTCAACATGATTCTGCAGAGCACCTTGGG 20901 ||||| ||||||||| ||| | || | || |||||| | ||||| || || | || Sbjct 254 CTACACCTATGAGTGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGG 313 Query 20902 AAACGATCTTAGAGTAGACGGTGCTTCGATCACGTACGAAAACATCACTCTCTACGCCTC 20961 ||| || || ||| ||| |||||| || | | | | ||||| ||||| ||| | Sbjct 314 AAATGACCTCAGAACAGATGGTGCTAACATAAGTTTCACCAGCATCAACCTCTATGCCAC 373 Query 20962 TTTCTTTCCCATGGCCCACAACACAGCTAGCACCCTGGAGGCTATGTTAAGAAACGATAC 21021 ||||| |||||||| |||||||| ||| || || || || ||| | | |||||||| Sbjct 374 CTTCTTCCCCATGGCTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCAACGATAC 433 Query 21022 CAACGATCAGTCTTTCATAGATTACTTATCGGCGGCTAACATGCTTTACACCATCCCCGC 21081 ||| |||||||| |||| || ||| | || || ||||||||||||||| ||||||| || Sbjct 434 CAATGATCAGTCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCTGC 493 Query 21082 CGGGGCCACCCAAGTTCCCATATCGATCCCATCAAGAAACTGGGCCGCTTTCCGCGGGTG 21141 | || ||| | |||| || || |||||||| | |||||||| || ||| | || || Sbjct 494 CAATGCAACCAACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTG 553 Query 21142 GAGTTTCACCCGGATCAAGGCCAAAGAAACCCCAGCGCTAGGTTCGCCCTTCGATCCCTA 21201 | |||||| | |||| |||| || || ||| | || || || ||||||||||| Sbjct 554 GTCCTTCACCAGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTA 613 Query 21202 CTTCAACTATAGTGGATCCATTCCCTATCTCGACGGAACCTTCTATCTCAGTCACACCTT 21261 |||| ||| |||||| |||||||| || || || || || || || | ||||| || Sbjct 614 CTTCGTTTATTCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACTTT 673 Query 21262 TAGGAGGGTTTCCGTTCAGTTTGACTCCTCCGTCACTTGGCCCGGAAACGACCGTCTTCT 21321 | || || ||| | |||||||||||| |||| ||||| || || ||| | || | Sbjct 674 CAAGAAGGGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTGTT 733 Query 21322 CACTCCTAATGAGTTTGAGATCAAACGCCTTATCGATGGAGAAGGCTATAACGTGTCGCA 21381 |||| ||||||||||| ||||| ||| | | ||||| ||||| || || ||| | || Sbjct 734 GTCTCCAAATGAGTTTGAAATCAAGCGCACTGTGGATGGGGAAGGATACAATGTGGCCCA 793 Query 21382 GAGCAACATGACTAAAGACTGGTTTTTGGTTCAGATGTTGGCCCACTACAACATCGGGTA 21441 |||||||||| ||||||||||| ||||||||||| | ||| |||||||||| || || Sbjct 794 ATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACTACAACATTGGCTA 853 Query 21442 TCAAGGTTATCACCTACCGGAATCTTACAAAGATAGGTGGTATGGTTTTCTACGAAACTT 21501 || || | | || | || || ||||| ||| | ||| ||| | ||||||| Sbjct 854 CCAGGGCTTTTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTTTTCAGAAACTT 913 Query 21502 TCAACCGCTCTGTCGTCAGGTGCCTGACCCTCTTCGTTTCACCGACTACAAAGCCGTCTC 21561 || || | | | |||||| ||| || || ||| ||||||||||||||| | Sbjct 914 CCAGCCTATGAGCAGGCAGGTGGTTGATGAGGTTAATTACACTGACTACAAAGCCGTCAC 973 Query 21562 TGTCTTGAATCAACACAATAACTCTGGTTTT 21592 | |||||||||| |||||||| ||| Sbjct 974 CTTACCATATCAACACAACAACTCTGGCTTT 1004 >seq15970 Length=4606 Score = 196 bits (216), Expect = 1e-45 Identities = 511/778 (66%), Gaps = 45/778 (6%) Strand=Plus/Minus Query 15408 TTCGTTCCGCCGAGATATCGTTCCGCCT-CGGAAGGAAGAAATAGCATCATTTACTCTCA 15466 ||||| || ||| | || | | ||||| ||||||| ||| | ||||| |||||| | Sbjct 856 TTCGTACCCCCGCGGTACC-TGGCGCCTACGGAAGGGAGACACAGCATTCGTTACTCGGA 798 Query 15467 ACTTCCTCCTTTGCACGACACTACTAAGATCTATCTTATCGATAACAAGTCT-GCAGATA 15525 || | || || |||| || || ||| | ||||| | || |||||||| || || | Sbjct 797 GCTGTCGCCCCTGTACGATACCACCAAGTTGTATCTGGTTGACAACAAGTCGCGCGGACA 738 Query 15526 TCGCTTCGCTCAATTATCAGAACGACCACAGTAATTATTTGACTAGTGTGGTTCAAAATA 15585 |||| || || || ||||||||||||||||| || | |||| | ||||| || || | Sbjct 737 TCGCCTCCCTGAACTATCAGAACGACCACAGCAACTTCCTGACCACGGTGGTGCAGAACA 678 Query 15586 GTGACTTTAGCCCACTGGAAGCTAGCACGCAGACCATTAACTTTGATGAGCGGTCTCGTT 15645 |||||||| ||| ||| |||||||| |||||||| |||||||| || ||||| || | Sbjct 677 ATGACTTTACCCCCACGGAGGCTAGCACCCAGACCATCAACTTTGACGAACGGTCGCGAT 618 Query 15646 GGGGCGCTGAGTTCAAAAGCATCCTGCATATGAATATGCCTAACGTCACCAGTTATATGT 15705 |||||| | | | || | |||| |||| | || ||||| ||||| | | || |||| Sbjct 617 GGGGCGGTCATCTGAAGACCATCATGCACACCAACATGCCCAACGTGAACGAGTACATGT 558 Query 15706 TCAGCAACTCGTTCAGGGTGAAAGTGATGG---CC------GCTCTCGAG------AACG 15750 |||||||| ||||| || || ||||||| || ||| ||| | | Sbjct 557 TCAGCAACAAGTTCAAGGCGAGGGTGATGGTGTCCAGAAAAGCTGCTGAGGGTGTTACAG 498 Query 15751 GAGTTGCCACTTACG-------AGTGGTTCACT--------------CTT---TACA--- 15783 | || ||| || | || || | || || | || Sbjct 497 TAAATGACACCTATGATCATAAAGAGGATATCTTGAAGTATGAGTGGGTTGAGTTCATTT 438 Query 15784 TACCCGAAGGCAATTATTCGGATATGAAGGTGATAGACTTAATGAACAACGCCATTTTAG 15843 |||| |||||||| | ||| | | | | ||| ||| | |||||||| ||||| | | Sbjct 437 TACCAGAAGGCAACTTTTCAGCCACCATGACGATCGACCTGATGAACAATGCCATCATTG 378 Query 15844 AAAACTATCTGTCGGTGGGCAGAAACCGGGGGGTGCCTGAAGATCAAATCGGGGTAAAGA 15903 | ||||| ||| | |||||| | || |||| ||| | | || || || ||| Sbjct 377 ACAACTACCTGGAAATTGGCAGACAGAATGGAGTGCTGGAAAGTGACATTGGTGTTAAGT 318 Query 15904 TAGACACTAGAAACTTTAGATTAGGTTTTGACCCCGTGAGTGAACTAGTGATGCCGGGTC 15963 | ||||||||||| || || | || | ||||||| | | | | | ||||| || Sbjct 317 TTGACACTAGAAATTTCAGGCTCGGGTGGGACCCCGAAACTAAGTTGATTATGCCAGGAG 258 Query 15964 TTTACACATATGAGGCTTTTCATCCGGATGTGGTACTACTCCCAGGCTGTGCCATTGATT 16023 | ||||| |||||||| || ||||| || | ||| | || || || || | | || | Sbjct 257 TCTACACTTATGAGGCATTCCATCCTGACATTGTATTGCTGCCTGGTTGCGGGGTAGACT 198 Query 16024 TCACGTACACCCGCCTAAACAACCTCCTCGGCATCCGCAAGCGGCAGCCGTTCCAACAAG 16083 | || | | ||| || | |||| | || |||||| | ||| | || || ||||| | | Sbjct 197 TTACTGAAAGCCGACTTAGCAACTTGCTTGGCATCAGGAAGAGACATCCATTCCAGGAGG 138 Query 16084 GCTTTGTCATCTCGTACGAGGATCTCAAGGGGGGTAACATTCCTGCCTTGCTGGACGT 16141 | || ||| ||| || ||||| | |||||| | ||||||||| | |||| || Sbjct 137 GTTTCAAAATCATGTATGAAGATCTTGAAGGGGGTGATATTCCTGCCCTTTTGGATGT 80 Score = 165 bits (182), Expect = 2e-36 Identities = 360/539 (67%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 12797 AGCCCGGCTCGGGCACATCTGGAGGCGGCCAATCTACTAACCACGTATCAGCAGACCGTG 12856 ||||| ||| |||||||| ||| |||||||| ||| | | | || ||||||||||| Sbjct 2622 AGCCCAGCTAGGGCACATGTGGCCGCGGCCAACCTAGTCTCAGCCTACGAGCAGACCGTG 2563 Query 12857 AAGGAAGAAAAGAACTTTCAGCAAAGTTTCAACAACCACGTCCGTACTTTAGTAGCGAGA 12916 ||||| || ||||| || || ||| |||| ||| || || || | | || | Sbjct 2562 AAGGAGGAGCGCAACTTCCAAAAATCTTTTAACACCCATGTGCGCACCCTGATCGCCCGC 2503 Query 12917 CAGGAAGTGACTGTGGGACTGATGCACCTTTGGGATTTTGTGGAGGCCCTCACTGAAAAC 12976 |||||||||| |||| |||||||| || ||||| | ||||||| |||| | ||| Sbjct 2502 GAGGAAGTGACCCTGGGTCTGATGCATCTGTGGGACCTGATGGAGGCTATCACCCAGAAC 2443 Query 12977 CCTTCCAGCCGCTCTCTCACTTCCCAACTTTTCCTTATACTCCAACATTCTCGCGACGAC 13036 || | ||| | || || | || || || || | | |||||| | ||| || Sbjct 2442 CCCACTAGCAAACCACTGACAGCTCAGCTGTTTCTGGTGGTTCAACATAGCAGGGACAAC 2383 Query 13037 GGTGTCTTTCGCGAGTCTCTCCTTCACATCGGGGATCCGGATGGGCGTTGGCTACTCGAT 13096 | | || | ||| | | | ||||| || || |||||| | ||||| ||| Sbjct 2382 GAGGCATTCAGGGAGGCGTTGTTGAACATCACCGAGCCTGATGGGAGATGGCTGTATGAT 2323 Query 13097 CTCATTAACGTTCTACACACTATCGTGGTGCAGGAGCGAAACCTCAAACTGGCCGAAAAG 13156 || || ||| | || || | ||| | |||||||| || | ||| |||| || || Sbjct 2322 CTGATCAACATCCTGCAAAGTATTATAGTGCAGGAACGTAGCCTGGGTTTGGCTGAGAAA 2263 Query 13157 GTGGCAGCCATCAACTACTCTGTTCTCACATTGGCTAAATTTTATGCGCGAAAGATCTAT 13216 |||||||| ||||||||||| || | | ||| |||| || || || |||||||| Sbjct 2262 GTGGCAGCTATCAACTACTCGGTCTTGAGCCTGGGCAAATACTACGCTCGCAAGATCTAC 2203 Query 13217 CACAACTATTTTGTGCCTATGGACAAAGAGGTGAAGATAGCCACCTTTTACATGAGGATG 13276 | | | | || || || || || ||||| ||||||| ||||||||| | ||| Sbjct 2202 AAGACCCCCTACGTACCCATAGATAAGGAGGTAAAGATAGATGGGTTTTACATGCGCATG 2143 Query 13277 GTGTTAAAAGTTCTGTGTCTGAGCGATGACTTGGGGGTTTATAGAAACGAGAAGATGCA 13335 | || || ||| ||||||||| || ||||||| ||| | || || | |||||| Sbjct 2142 ACTCTGAAGGTGCTGACTCTGAGCGACGATCTGGGGGTGTATCGCAATGACAGGATGCA 2084 Score = 165 bits (182), Expect = 2e-36 Identities = 321/470 (68%), Gaps = 12/470 (3%) Strand=Plus/Minus Query 11922 CTATCGGCCAGCACGGCTTGTTGTATCTGATTAAGTGTTTCCTCAAAATTGTCCAGGTCG 11981 || ||||| || | |||||| || | ||| | || || | | || | ||| | ||| Sbjct 4207 CTTTCGGCGAGGATGGCTTGCTGCACCTGGGTGAGGGTGGCTTGGAAGTCGTCAAAGTCC 4148 Query 11982 ATAAAACGGTGGTAGGCTGCGGTGTTGATGGTGTAGGAACAGTTGGATAGCATG-CT--C 12038 | ||| ||||||||||| |||||||||| |||||||| ||||||| |||| || | Sbjct 4147 ACAAAGCGGTGGTAGGCCCCGGTGTTGATTGTGTAGGAGCAGTTGGC---CATGACTGAC 4091 Query 12039 CAATCTACCGTTTGTTG---ATGGGGGACAGAAATCTCGGTGTACTTGAGACGACTGAAA 12095 || | || || || || | || | || | ||||||||||||||| || | | Sbjct 4090 CAGTTGACTGTCTGGTGCCCAGGGCGCACG---AGCTCGGTGTACTTGAGGCGCGAGTAT 4034 Query 12096 GCTCTGGAGTCAAAAATATAATCGTTACAAACTCTAATAATGTATTGATAGCCCACCAAA 12155 || | || |||||| || |||||||| || | | | ||| || ||||| | | | Sbjct 4033 GCGCGGGTGTCAAAGATGTAATCGTTGCAGGTGCGCACCAGGTACTGGTAGCCGATGAGA 3974 Query 12156 AAATGAGGGGGTGGATACAAGTACAGCGGCCACCGTTGAGTCGCTTCTGATCTAGGTGAC 12215 || || || ||||| | |||||| ||||| || | || || | || || | Sbjct 3973 AAGTGTGGCGGTGGCTGGCGGTACAGGGGCCATCGCTCTGTAGCCGGGGCTCCGGGGGCA 3914 Query 12216 AGATTTAACAACATGAGTCTGGGATAGCGGTAGATGTATCTGGACATCCAGGAGATGCCC 12275 || | | || |||||| | | | || | ||||||||| ||||||||||||| ||| || Sbjct 3913 AGGTCTTCCAGCATGAGGCGGTGGTAACCGTAGATGTACCTGGACATCCAGGTGATACCG 3854 Query 12276 AACGCGGTGGTGGAGGCGCGTGTCCAGTCGCCAACTCGGTTCCAGATGTTACGGAGGGGG 12335 | ||||||||||| || || | | |||| || |||||||||||||| || || || Sbjct 3853 GAGGCGGTGGTGGATGCCCGCGGGAACTCGCGTACGCGGTTCCAGATGTTGCGCAGCGGC 3794 Query 12336 TTGAACACGGTCATGGTGTAAACGCTCTGACCGGTGAGAGCGGCACAGTC 12385 |||| | ||||||| ||| | || || |||||| |||||||| Sbjct 3793 ATGAAGTAGTTCATGGTAGGCACGGTTTGGCCCGTGAGACGTGCACAGTC 3744 >seq10679 Length=1604 Score = 104 bits (114), Expect = 5e-18 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 24835 CTGCACTATATGTTCAAGCATGGCTATGTGCGGCAGGCCGTCAAAATCTCTAACGTGGAC 24894 |||||||| | || | ||||||| ||||||||||| ||| ||||| |||||||| Sbjct 1355 CTGCACTACACCTTTAGACATGGCTTCGTGCGGCAGGCATGCAAGATCTCCAACGTGGAG 1296 Query 24895 ATCACACACCTCGTGTCTTACATGGGTCTGTTACACGAAAACAGGTTGGGTCAATCGGTT 24954 | || |||| || ||||||||||| | || || || ||| || | || || || Sbjct 1295 CTTACCAACCTGGTTTCTTACATGGGCATTTTGCATGAGAACCGGCTAGGGCAGAGCGTC 1236 Query 24955 CTGCACAACACTCTAAAAGGCGATTCACGCCTAGACTATGTGCGTGACACCATCTA--TC 25012 ||||||| ||| || ||||| || | |||| ||||| | || ||| |||| || Sbjct 1235 CTGCACACCACCCTTAAAGGGGAGGCCCGCCGTGACTACATCCGAGACTGTGTCTACCTC 1176 Query 25013 TATTTTTGATATACACATGGCAGACAGCCATGGGTATCTGGCAGCAATGCCTGCAAGA 25070 || | || || || |||||||| | ||||||| | ||||| || || || |||| Sbjct 1175 TACCTCTGCCAT--ACCTGGCAGACTGGCATGGGTGTGTGGCAACAGTGTTTGGAAGA 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105734940313152