Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5310 246 2e-60 seq4557 114 1e-20 seq11308 91.5 1e-13 >seq5310 Length=161011 Score = 246 bits (272), Expect = 2e-60 Identities = 610/918 (66%), Gaps = 52/918 (6%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || || || |||||||||| || ||||| | |||||||| || ||| Sbjct 63560 TTTGTTCTTTTCCCCATAGAATATCATGATATCTGGCATTTCTACAAAAAGGCGGTGGCT 63501 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || ||||| | |||||| || |||||| | |||||||| |||||||| || | Sbjct 63500 TCTTTCTGGACTGTAGAAGAGGTGGATTTGTCCAAAGACTTCACACATTGGGAGTCACTT 63441 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| ||||||||||| | || ||||| || ||||| ||||| || || Sbjct 63440 AAGGTTGGGGAACGTCATTTTATATCATATGTGTTGGCATTCTTTGCGGCGAGTGATGGA 63381 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 ||||| ||||| || | || ||| ||||| || || | || || | || Sbjct 63380 ATAGTTCTAGAAAACTTACTGGAACGCTTTAGTCAAGAGGTACAGATCCCGGAGGTTCGC 63321 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 |||||||||||| | || || || || || ||||||||||| ||||||||| ||| || Sbjct 63320 TGTTTTTATGGGATGCAGATAGCTATCGAGAATATTCATTCTGAAATGTACTCTCTACTA 63261 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT-TGTTTAATGCGAT-AGAAA 44057 || |||||||| |||||||| | || ||| | | | || ||||| || || || Sbjct 63260 ATCGATACGTATATCAAAGACTCTAAAGA-AAGAGACTTTCTTTTCAATGCTATAAGCAA 63202 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATG 44114 | || || | | | ||||| | ||||| | | ||||| |||| || Sbjct 63201 CCTAACTTGTG-TAGCGAAAAAAGCTCAATGGGCATTGGATTGGATTGGTGATTCTAAGT 63143 Query 44115 ATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | | |||| |||||| | || || ||||||| || ||||| |||| || || || Sbjct 63142 CTACGTTTGCAGAACGCTTGGTTGCCTTTGCAGCAGTAGAAGGAGTTTTTTTCTCCGGCA 63083 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 || ||||| ||||||||| | ||||| ||||| | |||||||| ||| | ||| | Sbjct 63082 GCTTCGCGGCTATATTTTGGCTGAAGAAGCGAGGACTTATGCCTGGATTGTCCTTTAGTA 63023 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG-CTTGT-TACTTGG 44292 |||||||||| ||| | || ||||| |||||||| || || ||||| ||| | | | Sbjct 63022 ATGAGTTAATCAGTAGAGACGAAGGATTACATTGTGACTTCGCTTGTCTTCTGTTTAAGC 62963 Query 44293 ATATCTAGGAGACGATAAGCCTTC-ATGTAAGACAATTA-CAGATATTGTTGTAGAGGCA 44350 | || || | | |||||||| | | | | | ||| || | ||||| Sbjct 62962 ACAT-TATTA----AAAAGCCTTCTAGGGTTCGCGTTGAGTCGATTATGAAG--GAGGCG 62910 Query 44351 GTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT 44410 || || |||||||| ||| || | ||| || || || | |||||| ||||||||| Sbjct 62909 GTGCTAATCGAACAAGAGTTTCTGTCTGAAGCCTTGCCAGTCAGTTTAATTGGAATGAAT 62850 Query 44411 GAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGT 44470 | ||| ||| |||||||||| |||||| ||||| | || | ||||| ||| Sbjct 62849 TGCAAGCTAATGTGCCAGTATATTGAATTCATTGCTGATCGGCTGCTGGTTGAACTCGGT 62790 Query 44471 TGCGATAAACACTAT-------------ATTGT-----------------AC----AAAA 44496 | ||| ||| | | ||||| || | || Sbjct 62789 TACGAAAAAGTTTGTGGTTTTCGTTTTAATTGTTTCTGTTTAGATTTATCACTCTGATAA 62730 Query 44497 CCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACG 44556 || |||||||||||||||||||| || | |||||||| || |||||||||||||| || Sbjct 62729 TCCTTTTGATTTTATGGAAAATATATCCATAGAAGGCAAGACGAACTTTTTTGAAAAGCG 62670 Query 44557 CGTTGGAGAATATCAGCG 44574 ||||| |||||||| || Sbjct 62669 GGTTGGTGAATATCAACG 62652 >seq4557 Length=193535 Score = 114 bits (126), Expect = 1e-20 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||||| || | | ||||| ||||| ||| || ||||||||||| || Sbjct 166036 AAACATGTACGTGGTATTCTATTGTATGGTCCACCTGGTACGGGTAAAACATTAATGGCA 165977 Query 19396 AGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATC 19455 || || || ||| | |||| | || || ||||| |||||||| || Sbjct 165976 CGACAAATTGGTACTATGCTTAATGCTCGTGAACCGAAGATTGTGAATGGTCCAAGTATA 165917 Query 19456 TTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAA 19515 ||| |||||||||| || |||| |||| ||| |||| || || |||||||||||| Sbjct 165916 TTAGATAAATATGTTGGAGAATCTGAAGCGAATATACGCAAATTATTCGCTGACGCTGAA 165857 Query 19516 GAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGAATT 19574 ||||| |||||||| | ||| |||||| | | | || ||||| ||| | |||||| | Sbjct 165856 GAAGAGGAAAAACGTAT-GGGTGCAAAATCTGCACTACATATTATTATATTTGATGAAAT 165798 Query 19575 GGACGCAATCTGTAA 19589 || || || ||||| Sbjct 165797 TGATGCTATTTGTAA 165783 >seq11308 Length=25988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Plus Query 41133 GACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATT 41192 |||| ||| || || | ||||| || || || || |||||| || | || ||||||||| Sbjct 4025 GACA-GGGTCTTGGCATACCGTTCAATATCGCAAGCTATGCTTTGTTAACTTATATGATT 4083 Query 41193 GCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATT 41252 || || || || ||||||||||| |||||||| ||||| | || |||| ||||||| Sbjct 4084 GCTCATGTAACTGGCTTAAAACCTGGCGAATTTGTGCACACTATTGGTGATGCACATATT 4143 Query 41253 TACATTAATCACATAGAGCCGTTAACAGAACA 41284 || |||||| ||| ||||| ||||| Sbjct 4144 TATTCAAATCACCGTGAGGCGTTACTTGAACA 4175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397334667613240