Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5310 102 7e-17 seq3731 98.7 8e-16 seq4124 87.8 2e-12 >seq5310 Length=161011 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 108556 CAAGCGAACAAGCAATGTAATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAA 108615 |||||||| ||||||||||||||||| | ||| || | ||| ||||| || | ||| Sbjct 62977 CAAGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAAT 63036 Query 108616 CCCGGCATAATACCTTTCGTTTTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaT 108675 || ||||||| ||| | | || | ||||||| ||||| || |||||||| ||||| Sbjct 63037 CCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAA 63096 Query 108676 ATTCCCTCGACAATTGCAAACGCAACCATTCTTTGTGCCAA 108716 | ||| || || |||||| ||||||| | || ||| || Sbjct 63097 ACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAA 63137 >seq3731 Length=1156867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 27039 ACCAA-ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||| ||| | ||||| |||| || || || ||||| | | | | | ||||| Sbjct 1054736 ACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGGTTCTTCCATCTTC 1054677 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || || |||| ||||| |||||||| || || | |||||||||||| Sbjct 1054676 CAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCCTCTTTATCTTG 1054617 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||| || || | | ||| | || || | | |||||||| || ||||||| ||| Sbjct 1054616 GATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTT 1054557 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTG-CTAAAAATT 27261 ||||| || ||||||||||| || ||||| | || ||||| ||| Sbjct 1054556 CCCCGTAAGTGTTTTCACAAAAATCTGCAT-GTTGACTAAATATT 1054513 >seq4124 Length=298687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||||| || || || || ||||| |||||||| | | | || || | ||||| | ||| Sbjct 13846 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTG 13904 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | || | ||| ||||| || || || | ||| |||||||| ||| || Sbjct 13905 TTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTT 13964 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | || | ||||| | | ||||| || | || || | || ||||| Sbjct 13965 CGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 14024 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||||||||| |||||| Sbjct 14025 CAATGTCTTCACAAAGATCTGCATA 14049 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||||| || || || || ||||| |||||||| | | | || || | ||||| | ||| Sbjct 14074 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTG 14132 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | || | ||| ||||| || || || | ||| |||||||| ||| || Sbjct 14133 TTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTT 14192 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 ||||| | || | ||||| | | ||||| || | || || | || ||||| Sbjct 14193 CGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTCTTCCCCGT 14252 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||||||||| |||||| Sbjct 14253 CAATGTCTTCACAAAGATCTGCATA 14277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 27045 TGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||||| || || || || ||||| |||||||| | | | || || | ||||| | ||| Sbjct 14302 TGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTA-CGACCATCTTCCAACTG 14360 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 |||||| ||| | || | ||| ||||| || || || | ||| |||||||| ||| || Sbjct 14361 TTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTT 14420 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 |||| | || | ||||| | | ||||| || | || || | || ||||| Sbjct 14421 CGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGT 14480 Query 27224 CAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||||||||| |||||| Sbjct 14481 CAATGTCTTCACAAAGATCTGCATA 14505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424804679213376