Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3731 109 3e-19 seq4124 84.2 1e-11 >seq3731 Length=1156867 Score = 109 bits (120), Expect = 3e-19 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 || |||||||| || || | |||| | ||||| |||||||| || ||||| || | | Sbjct 1054711 TGTATGTTATAGTCAGAGACGGTTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGA 1054652 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAAT 34640 || ||||| || || || | ||||| || ||| ||| ||| | ||||| | | ||| Sbjct 1054651 CGTTGTTGATCTGGTGGGATACCCTCTTTATCTTGGAT-TTTAGCNTTAACTGCTTCAAT 1054593 Query 34641 TGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAAT 34700 ||| || | ||| ||||| | ||||| ||||| || || | |||||||||||||| Sbjct 1054592 TGTATCAGCAGGCTCAACTTCAAGCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAAT 1054533 Query 34701 CTGCATGTTGA 34711 ||||||||||| Sbjct 1054532 CTGCATGTTGA 1054522 >seq4124 Length=298687 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| |||||||| || || || | || || | ||||| | |||||||| || || Sbjct 14541 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14600 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 ||| ||||| |||||||| || || | || || || ||| ||| ||| | ||| || Sbjct 14601 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGAT-TTTCGCTTTCACAT 14659 Query 34635 TAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | ||| ||||| ||| || |||| || ||||| || || || || || || | Sbjct 14660 TCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAA 14719 Query 34694 CAAAAATCTGCAT 34706 | ||||||||||| Sbjct 14720 CGAAAATCTGCAT 14732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314633521708184