Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4755 143 2e-29 seq4124 143 2e-29 seq11996 109 5e-19 seq3782 82.4 7e-11 >seq4755 Length=318840 Score = 143 bits (158), Expect = 2e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 26974 TTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTG 27033 ||| || || || ||||||||||||||||| |||||||| || ||| | |||||| | | Sbjct 279665 TTACTTCATTGGCAATGCAGATATTTGTAAAGACTCTGACTGGTAAGACGATTACTTTGG 279724 Query 27034 AAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCA 27093 |||| || || ||| | ||||||| || ||| || || || || || || || | Sbjct 279725 AAGTTGAGCCAAGTGACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGGA 279784 Query 27094 TACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG 27153 | || ||||||||||| |||||||| | || || || || |||| || || || Sbjct 279785 TTCCTCCCGATCAACAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTT 279844 Query 27154 TTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTG 27213 | || || |||||||| |||||||||||||| |||| ||||| | ||| | || |||| Sbjct 279845 TGTCTGACTACAACATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTG 279904 Query 27214 GCAT 27217 | || Sbjct 279905 GTAT 279908 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || |||||||| || ||| | |||||| | ||||| || || Sbjct 279907 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 279966 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || || || || || || || ||||||||| Sbjct 279967 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280026 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || || |||| || || || | || || |||||| Sbjct 280027 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280086 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| |||| ||||| | ||| | || ||||| || Sbjct 280087 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTGGTAT 280136 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || |||||||| || ||| | |||||| | ||||| || || Sbjct 280135 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280194 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || || || || || || || ||||||||| Sbjct 280195 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280254 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || || |||| || || || | || || |||||| Sbjct 280255 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280314 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||||||||| |||| ||||| | ||| | || ||||| || Sbjct 280315 ATCCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGTGGTGGTAT 280364 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || |||||||| || ||| | |||||| | ||||| || || Sbjct 280363 ATGCAGATATTTGTGAAGACTCTGACTGGTAAGACGATTACTTTGGAAGTTGAGCCAAGT 280422 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || || || || || || || ||||||||| Sbjct 280423 GACACTATTGAGAATGTGAAAGCTAAGATCCAGGATAAGGAGGGAATTCCTCCCGATCAA 280482 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | || || || || |||| || || || | || || |||||| Sbjct 280483 CAACGTTTAATCTTTGCTGGTAAGCAGCTGGAGGATGGTCGCACTTTGTCTGACTACAAC 280542 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||||||||| | || ||||| || || | || ||||| Sbjct 280543 ATCCAAAAGGAGTCGACTCTGCACTTGGTGTTACGACTTCGAGGTGG 280589 >seq4124 Length=298687 Score = 143 bits (158), Expect = 2e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||| |||| || ||| | ||||| | || || || || Sbjct 14732 ATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 14673 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || ||| ||||| ||||| |||||||| || || || || ||| Sbjct 14672 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14613 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| || ||||| |||||||| || || |||| || || ||||| Sbjct 14612 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGT-CGTACGTTATCTGACTACAA 14554 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || ||||| | ||| | ||| | || ||||| || Sbjct 14553 CATTCAGAAGGAGTCTACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14503 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || | || || || || Sbjct 14048 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13989 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || ||| ||||| ||||| |||||||| || || || || ||| Sbjct 13988 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 13929 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| || ||||| |||||||| || || |||| || || ||||| Sbjct 13928 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGT-CGTACGTTATCTGACTACAA 13870 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || ||||| | ||| | ||| | || ||||| || Sbjct 13869 CATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 13819 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || | || || || || Sbjct 14276 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACAATCACATTGGAGGTTGAGCCTAGT 14217 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || ||| ||||| ||||| |||||||| || || || || ||| Sbjct 14216 GACACGATTGAGAATGTGAAAGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14157 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| || ||||| |||||||| || || |||| || || ||||| Sbjct 14156 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGT-CGTACGTTATCTGACTACAA 14098 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || ||||| | ||| | ||| | || ||||| || Sbjct 14097 CATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14047 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || | || || || || Sbjct 13820 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 13761 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || ||||||||||| |||||||| || || || || ||| Sbjct 13760 GACACGATTGAGAATGTGAAGGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGACCAA 13701 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| || ||||| |||||||| || || |||| || || ||||| Sbjct 13700 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGT-CGTACGTTATCTGACTACAA 13642 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| |||||||| || ||||| | ||| | ||| | || ||||| Sbjct 13641 CATTCAGAAGGAGTCAACTTTACACCTTGTTCTTCGTCTTCGTGGTGG 13594 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || ||| | || || | || || || || Sbjct 14504 ATGCAGATCTTTGTGAAGACATTGACGGGGAAGACGATCACATTGGAGGTTGAGCCTAGT 14445 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||||| || || ||||| ||||| |||||||| || || || || ||| Sbjct 14444 GACACGATTGAGAATGTGAAGGCGAAAATCCAAGATAAAGAAGGTATTCCTCCTGACCAA 14385 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| || ||||| |||||||| || || |||| || || ||||| Sbjct 14384 CAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGT-CGTACGTTATCTGACTACAA 14326 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || ||||| | ||| | ||| | || ||||| || Sbjct 14325 CATTCAGAAGGAGTCAACTTTACACCTTGTTCTCCGTCTACGTGGTGGTAT 14275 >seq11996 Length=10337 Score = 109 bits (120), Expect = 5e-19 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAA-ACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC--G 27044 ||||| || ||||| || || || | || ||| | || || | || || || || | Sbjct 10126 ATGCAAATCTTTGTGAAGCACATTGCCGGGGAAGCCAATCACATTGGAGGTTGAGCCTAG 10185 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | | || ||||||||| || ||| ||||||||||| |||||||| || || || || Sbjct 10186 TGC-ACACGATTGAGAATGTGAAAGCGAAAATTCAAGATAAAGAAGGTATTCCTCCTGAC 10244 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163 ||||| ||||| |||| ||| || | ||| |||||||| | ||| |||| || || || Sbjct 10245 CAACAACGTTTGATATTCGCTGGTACACAGTTGGAAGA-TGGTCGTACGTTATCTGACTA 10303 Query 27164 CAACATTCAAAAGGAGTCGACCTTACA 27190 ||||| ||| |||||||| || ||||| Sbjct 10304 CAACACTCAGAAGGAGTCTACTTTACA 10330 >seq3782 Length=779739 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 |||||||| ||||||||||| || || ||| ||| ||| | ||||| || ||||| Sbjct 417879 TTGTGGAATGCGGCACAACGCCAACTGGTGCGGACAGGAAAACTTCACGGGTTCCTGCGC 417938 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGG 135562 ||||| ||||| ||||| |||||||||||| Sbjct 417939 ATGTACTGGGCTAAAAAAATATTGGAATGG 417968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434782227048960