Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4755 161 2e-34 seq4124 141 2e-28 seq3731 116 9e-21 seq11996 100 7e-16 >seq4755 Length=318840 Score = 161 bits (178), Expect = 2e-34 Identities = 172/226 (76%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| ||||||||||| || || | | || Sbjct 279900 ACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 279841 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| | |||||||| || ||||||| || Sbjct 279840 GCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCC 279781 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||| ||||||||||| |||||| || || || |||||| ||| ||||| || Sbjct 279780 CTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCA---CTTGGCTCAACTTC 279724 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||| |||||||| || || |||||||||||||| | ||||||| Sbjct 279723 CAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 161 bits (178), Expect = 2e-34 Identities = 171/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||| ||||| ||||| ||||||||||| || || | | || Sbjct 280583 CGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTG 280524 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| ||||||||||| || || ||||| | |||||||| || ||||||| ||| Sbjct 280523 CGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCC 280464 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 ||||| ||||||||||| |||||| || || || |||||| ||| ||||| || Sbjct 280463 TCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCA---CTTGGCTCAACTTCC 280407 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||| |||||||| || || |||||||| ||||| | |||||| Sbjct 280406 AAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| ||||||||||| || || | | || Sbjct 280128 ACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 280069 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| | |||||||| || ||||||| ||| Sbjct 280068 GCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCC 280009 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||| ||||||||||| |||||| || || || |||||| ||| ||||| || Sbjct 280008 CTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCA---CTTGGCTCAACTTC 279952 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||| |||||||| || || |||||||| ||||| | |||||| Sbjct 279951 CAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 159 bits (176), Expect = 8e-34 Identities = 171/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| ||||| ||||||||||| || || | | || Sbjct 280356 ACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGT 280297 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| ||||||||||| || || ||||| | |||||||| || ||||||| ||| Sbjct 280296 GCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCC 280237 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTC 211069 ||||| ||||||||||| |||||| || || || |||||| ||| ||||| || Sbjct 280236 CTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCA---CTTGGCTCAACTTC 280180 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||| |||||||| || || |||||||| ||||| | |||||| Sbjct 280179 CAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 >seq4124 Length=298687 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | ||| ||||| || || ||||| || || | | || | |||||| Sbjct 14521 AGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14580 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || ||||| || | ||||||||||||||||||| ||||| || || Sbjct 14581 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14640 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || |||||| |||||||| | || |||||| Sbjct 14641 TGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTC 14700 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| | |||||| || || | ||||||| Sbjct 14701 TTTCCCGTCAAAGTCTTAACGAAAATCTGCATT 14733 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | ||| ||||| || || ||||| || || | | || | |||||| Sbjct 13837 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 13896 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || ||||| || | ||||||||||||||||||| ||||| || || Sbjct 13897 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 13956 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || |||||| |||||||| | ||||||||| Sbjct 13957 TGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTC 14016 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 14017 TTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| | ||| ||||| || || ||||| || || | | || Sbjct 13599 ACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGT 13658 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||| ||| || || ||||| || | ||||||||||||||||||| || Sbjct 13659 ACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 13718 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || || || || ||||| || || || |||||| |||||||| | Sbjct 13719 TTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAA 13778 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| ||||| | ||||| ||||| | |||||| Sbjct 13779 TGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | ||| ||||| || || ||||| || || | | || | |||||| Sbjct 14065 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14124 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || ||||| || | ||||||||||||||||||| ||||| || || Sbjct 14125 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14184 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || |||||| || || || |||||| |||||||| | ||||| ||| Sbjct 14185 TGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGTC 14244 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 14245 TTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| | ||| ||||| || || ||||| || || | | || | |||||| Sbjct 14293 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14352 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || ||||| || | ||||||||||||||||||| ||||| || || Sbjct 14353 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14412 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||| || || || |||||| |||||||| | ||||||||| Sbjct 14413 TGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTC 14472 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| ||||| | |||||| Sbjct 14473 TTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 >seq3731 Length=1156867 Score = 116 bits (128), Expect = 9e-21 Identities = 162/226 (72%), Gaps = 1/226 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGAC-AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGG 210951 |||||||| || || ||| ||||| || || |||| || |||||||| || | | || Sbjct 1054749 ACGAAGTCGAAGAACCAAGATGAAGTGTAGATTCTTACTGTATGTTATAGTCAGAGACGG 1054690 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | |||||||||||||| || ||||| || || ||||| |||||||| || || || | | Sbjct 1054689 TTCTTCCATCTTCCAGTTGTTTGCCAGCAAAAATAAGACGTTGTTGATCTGGTGGGATAC 1054630 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 | || || || ||||| || || || ||| || || |||| ||||| || | Sbjct 1054629 CCTCTTTATCTTGGATTTTAGCNTTAACTGCTTCAATTGTATCAGCAGGCTCAACTTCAA 1054570 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | || || || || ||||| || || || ||||| | |||||| || Sbjct 1054569 GCGTTATAGTTTTCCCCGTAAGTGTTTTCACAAAAATCTGCATGTT 1054524 >seq11996 Length=10337 Score = 100 bits (110), Expect = 7e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||| | ||| ||||| || || |||| || || | | || | ||||||||| Sbjct 10336 ACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCC 10277 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||| | || ||||| || | ||||||||||||||||||| ||||| || || || Sbjct 10276 AACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGA 10217 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGT-CAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 || || |||||| || || || |||| || |||||||| | ||||| | ||| Sbjct 10216 ATTTTCGCTTTCACATTCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCTT 10157 Query 211085 TCCCGTGAGAGT-CTTTACAAACACCTGCATTTT 211117 |||| | || ||| ||||| | |||||||| Sbjct 10156 CCCCGGCAATGTGCTTCACAAAGATTTGCATTTT 10123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158779996246520