Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4124 120 2e-22 seq3731 116 3e-21 >seq4124 Length=298687 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||||||||| || | |||||||| ||||| || | || ||||| | | Sbjct 14733 AATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 14674 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | ||| | ||||| || ||||||||| | || || || | Sbjct 14673 TGACACGATTGAGAATGTGAAAGC-GAAAATCCAAGATAAAGAAGGTATTCCTCCTGACC 14615 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || ||||| ||||||| | || || ||| || |||| Sbjct 14614 AACAACGTTTGATATTCGCTGGTAAACAGTTGGAAGATGGTCGTACGTTATCTGACTACA 14555 Query 23789 ACATACAAAAAGAGTCCACATTACA 23813 |||| || || ||||| || ||||| Sbjct 14554 ACATTCAGAAGGAGTCTACTTTACA 14530 >seq3731 Length=1156867 Score = 116 bits (128), Expect = 3e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23599 TAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||| | || ||||||||||| || ||||| || ||||| ||||| || || || ||| Sbjct 1054515 TATTTAGTCAACATGCAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAA 1054574 Query 23659 GTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 ||||| | | || || ||||| | | || ||||| || ||||| ||| | Sbjct 1054575 GTTGAGCCTGCTGATACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATC 1054634 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || ||||||||||| ||| | || ||||| ||||||||||||||||| | | | || | Sbjct 1054635 CCACCAGATCAACAACGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTC 1054694 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 || || |||||||| |||| || ||| | ||| Sbjct 1054695 TCTGACTATAACATACAGTAAGAATCTACACTTCAT 1054730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337906414964384