Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4124 131 4e-25 seq11996 96.9 8e-15 >seq4124 Length=298687 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| | ||| || || || || | ||||| || | || || | |||||| Sbjct 14521 AGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14580 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || |||||||| || | ||||||||||| || ||||||||||| || ||| Sbjct 14581 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14640 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || |||||| || || ||||| | || || || ||||| ||||| Sbjct 14641 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGT 14699 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||||||||| || | ||| | |||||| Sbjct 14700 CTTTCCCGTCAAAGTCTTAACGAAAATCTGCATT 14733 Score = 122 bits (134), Expect = 2e-22 Identities = 185/261 (71%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 225440 GAATGAAAGGTAAAAAACAGTAAATATTTTATTTCTGAAATAAAATATTCTA--ACGAAG 225497 |||||||| ||||| | | |||| | | || |||||| | | || | |||||| Sbjct 13546 GAATGAAAC-TAAAATTTATTTAATAACTCAAATCCGAAATATTACAGTCCACCACGAAG 13604 Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 | || |||||||| | ||| || || || || | ||||| || | || || | || Sbjct 13605 ACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACC 13664 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||| || |||||||| || | ||||||||||| || ||||||||||| || Sbjct 13665 ATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 13724 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||||||| || || ||||| | || || || || ||||| Sbjct 13725 ATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGAT 13784 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 |||||| |||||||| || || Sbjct 13785 CGTCTTCCCCGTCAATGTCTT 13805 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| | ||| || || || || | ||||| || | || || | |||||| Sbjct 14293 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14352 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || |||||||| || | ||||||||||| || ||||||||||| || ||| Sbjct 14353 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14412 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| || || ||||| | || || || || ||||||||| Sbjct 14413 TGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTC 14472 Query 225682 TTGCCCGTCAAAGTTTT 225698 || |||||||| || || Sbjct 14473 TTCCCCGTCAATGTCTT 14489 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| | ||| || || || || | ||||| || | || || | |||||| Sbjct 13837 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 13896 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || |||||||| || | ||||||||||| || ||||||||||| || ||| Sbjct 13897 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 13956 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || |||||| || || ||||| | || || || || |||||||| Sbjct 13957 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGT 14015 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| |||||||| || || Sbjct 14016 CTTCCCCGTCAATGTCTT 14033 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| | ||| || || || || | ||||| || | || || | |||||| Sbjct 14065 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 14124 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || |||||||| || | ||||||||||| || ||||||||||| || ||| Sbjct 14125 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 14184 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || |||||| || || ||||| | || || || || ||||| || Sbjct 14185 TGGAT-TTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATTGT 14243 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| |||||||| || || Sbjct 14244 CTTCCCCGTCAATGTCTT 14261 >seq11996 Length=10337 Score = 96.9 bits (106), Expect = 8e-15 Identities = 163/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| | ||| || || || || ||||| || | || || | |||||||| Sbjct 10336 ACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCC 10277 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | ||| | |||||||| || | ||||||||||| || ||||||||||| || ||||| Sbjct 10276 AACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGA 10217 Query 225625 ATCTTTTGC-TTCACAGCTTCGATGGTGT---CTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||| || |||||| || || |||| || ||| || || || || ||||| | Sbjct 10216 AT-TTTCGCTTTCACATTCTCAATCGTGTGCACT-AGG-CTCAACCTCCAATGTGATTGG 10160 Query 225681 CTTGCCCGTCAAAGT-TTTTATGAACACTTGCATTTTATGGTTACTTAC 225728 ||| |||| ||| || || | || | ||||||||| | ||||||| Sbjct 10159 CTTCCCCGGCAATGTGCTTCACAAAGATTTGCATTTTCTATGTACTTAC 10111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192148483943312