Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq5310 273 2e-68 >seq5310 Length=161011 Score = 273 bits (302), Expect = 2e-68 Identities = 550/810 (68%), Gaps = 12/810 (1%) Strand=Plus/Plus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || |||| || ||||| | ||||| |||||||||| ||| || | ||| || |||||| Sbjct 62800 ACCAGCAGCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCA 62859 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 ||||| || || || | || | | || |||||||||||| || || || || | Sbjct 62860 ATTAAACTGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTC 62919 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAA-GTATCCAAACAATAAACA 4549 || || | | | | |||| || || |||| ||| || ||||| | ||| Sbjct 62920 ATAATCGACTCAACGCGAACCCTAGAAGGCTT-TTTAATAATGTGCTTAAACAGAAGACA 62978 Query 4550 CGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCC 4609 || || |||||||| || ||||||||||| || || | || ||| ||| | ||||| Sbjct 62979 AGCGAAGTCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCC 63038 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||| | |||| ||| || |||||||||||||| || || || || || || | Sbjct 63039 AGGCATAAGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAAC 63098 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTA 4727 |||||||| || ||||| || || || || | |||| | ||| | || | Sbjct 63099 TCCTTCTACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTA--GACTTAGAATCACCA 63156 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| | |||||||| | |||||||||| || || | | || |||||| || Sbjct 63157 ATCCAATCCAATGCCCATTGAGCTTTTTTCGCTACACAAGTTAGGTTGCTTATAGCATTG 63216 Query 4788 AATA---ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 || | | | |||| || | | ||||| ||||| || || |||||||| ||| Sbjct 63217 AAAAGAAAGTCTCTTTCTTTAGA---GTCTTTGATATACGTATCGATTAGTAGAGAGTAC 63273 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||||||||| ||||| || ||||| ||||| | || ||||| || | | | || | Sbjct 63274 ATTTCAGAATGAATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGG 63333 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | || || || | || ||| | ||| | ||||||||| ||||| || ||||| || Sbjct 63334 ATCTGTACCTCTTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCC 63393 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 ||||| || ||||| |||| |||||||| | |||| || ||||||| | ||| Sbjct 63394 GCAAAGAATGCCAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCAA 63453 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 || | || ||||| | ||||| || ||||| |||||||| || || || |||| ||| Sbjct 63454 TGTGTGAAGTCTTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTT 63513 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTGTCGTTA 5144 ||||| | | ||| |||||| |||| | || || | | ||||| | || ||| Sbjct 63514 TTGTAGAAATGCCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTT 63573 Query 5145 GGTGTAAGAAGCGGTTCTTGAACAATATCA 5174 ||| |||| | ||||| | |||| ||| Sbjct 63574 GGTTTAAGCAAGGGTTCCAGTTCAATCTCA 63603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426919233500984