Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_030860.1 Length=29581 Score E Sequences producing significant alignments: (Bits) Value seq16058 273 4e-69 seq15970 98.7 2e-16 >seq16058 Length=1913 Score = 273 bits (302), Expect = 4e-69 Identities = 578/849 (68%), Gaps = 14/849 (2%) Strand=Plus/Plus Query 17495 TGGTCTCCTGATATTATGGATAATGTTAATCCTTTTAACCATCATAGAAATACAGGGTTA 17554 ||||||| ||| ||||| ||||| ||||| |||||||| || | ||| | || || Sbjct 90 TGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACCGGAATGCTGGCCTA 149 Query 17555 AAATATAGGTCACAATTGTTAGGAAATGGTAGAGTTTGTGAATTTC-ATATTCAAGTACC 17613 || |||| | | || ||||| | | |||| |||| | || ||||| || Sbjct 150 CGCTACCGGTCCATGCTTCTGGGCAATGGCCGT-TATGTGCCTTTCCACATACAAGTGCC 208 Query 17614 TCAAAAGTTTTTTGCTATTAAAAATTTAATGTTACTTCCTGGTACTTACACTTATGAATG 17673 |||||| || |||||| | || || || | | || ||||| | ||||| ||||| || Sbjct 209 TCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCCTACACCTATGAGTG 268 Query 17674 GTCCTTTAGAAAAGATGTAAATATGATTCTTCAAAGTTCTTTAGGTAATGATCTCAGAGT 17733 | ||| ||||| | ||| || ||| | || |||||||| | || ||||| |||||| Sbjct 269 GAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGGAAATGACCTCAGAAC 328 Query 17734 AGATGGAGCAGAAGTTAGAATTCAC-AGTATAAATTTATATGCAAGTTTTTTCCCAATGG 17792 |||||| || | | || ||||| || || || | ||||| | || ||||| |||| Sbjct 329 AGATGGTGCTAACATAAGT-TTCACCAGCATCAACCTCTATGCCACCTTCTTCCCCATGG 387 Query 17793 CCCATAATACAGCTTCAACTTTGGAAGCTATGTTAAGAAATGAAACTAATAATCAAAATT 17852 | || || || ||||||||| | ||||| ||| | | || || || ||| |||| | Sbjct 388 CTCACAACACCGCTTCAACTCTTGAAGCCATGCTGCGCAACGATACCAATGATCAGTCAT 447 Query 17853 TCAACGACTATTTATCTTCTGCTAATATGTTGTATCCTATTCCTCCTGATACTACTCAAA 17912 |||||||||| | ||| | ||||| ||| | || || || ||| | || | || | | Sbjct 448 TCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCTGCCAATGCAACCAACA 507 Query 17913 TACCTATCTCAATTCCGTCAAGAAATTGGGCTGGTTTCAGAGGATGGAGTTTTACAAGAT 17972 | || || || || || || | || ||||| | ||||| || ||| || || ||| Sbjct 508 TTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGAC 567 Query 17973 TGAAACAAAAAGAAACTCCTGCCTTAGGATCTGCTTTTGATCCCTATTTTACATATTCTG 18032 | ||| || || ||||| | | ||||| | || |||||||| || ||||||| Sbjct 568 TCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTG 627 Query 18033 GAACTATACCATATCTTGATGGAACATTTTATTTAAATCATACCTT-TAGAAGAGTTTCA 18091 || |||| || || || ||||| || ||||| | || || || || ||||| | | || Sbjct 628 GATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACTTTCAAGAAGGGCTCCA 687 Query 18092 ATTCA-ATTTGATTCTTCTGTAAGTTGGCCAGGAAATGATAGGTTGTTGACACCTAATGA 18150 ||| ||||| || || || || ||||| || ||||| ||| ||||| | || ||||| Sbjct 688 --TCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGA 745 Query 18151 ATTTGAAATTAAAAG-AATGTATGATGGAGAAGGCTATACAACAT--ATCAAAGTACTAT 18207 |||||||| || | | ||| ||||| ||||| |||||| | ||| | | || Sbjct 746 GTTTGAAATCAAGCGCACTGT-GGATGGGGAAGG--ATACAATGTGGCCCAATGCAACAT 802 Query 18208 GACAAAAGATTGGTTTTTAATTCAAATGTTGGCAAATTATAATATAGGTTATCAAGGGTT 18267 ||| ||||| ||||| | |||| ||| | || || || || || || || || || || Sbjct 803 GACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACTACAACATTGGCTACCAGGGCTT 862 Query 18268 TTATCTTCCTGATGAATTTAAAGAAAAAAGTTATTCATTTTTGAAAAATTTTGTTCCTAT 18327 ||| | ||||| | || || || | || || ||||| | ||| || ||||| Sbjct 863 TTACATCCCTGAGGGATACAAGGATCGCATGTACTCCTTTTTCAGAAACTTCCAGCCTAT 922 Query 18328 GTGTAGGCA 18336 | | ||||| Sbjct 923 GAGCAGGCA 931 >seq15970 Length=4606 Score = 98.7 bits (108), Expect = 2e-16 Identities = 237/355 (67%), Gaps = 3/355 (1%) Strand=Plus/Minus Query 12578 TATGAGTGGGTGGATTTGCAAATT-CCTGAAGGTAATTTTTCCTTAATTATGGTTTTGGA 12636 ||||||||||| || || || || || ||||| || ||||| | ||| | || Sbjct 459 TATGAGTGGGTTGAGTT-CATTTTACCAGAAGGCAACTTTTCAGCCACCATGACGATCGA 401 Query 12637 ACTAATGAATAATGCAGTAGTAGAACATTATATGTCTGTGGGTAGGCAAAAAGGAGTAGA 12696 || ||||| ||||| | | || | || || | || || || || ||||| Sbjct 400 CCTGATGAACAATGCCATCATTGACAACTACCTGGAAATTGGCAGACAGAATGGAGTGCT 341 Query 12697 AGAATCAGATATAGGTGTTAAATTTGATACTAGAAATTTCAAATTGGGTTGGGATCCAGT 12756 ||| || || |||||||| ||||| ||||||||||||| | || ||||| || | Sbjct 340 GGAAAGTGACATTGGTGTTAAGTTTGACACTAGAAATTTCAGGCTCGGGTGGGACCCCGA 281 Query 12757 TACTAAATTGGTTAGCCCTGGAGTATATACTTATGAGGCTTTTCATCCAGATGTTATTTT 12816 ||||| ||| ||| || ||||| || ||||||||||| || ||||| || || | || Sbjct 280 AACTAAGTTGATTATGCCAGGAGTCTACACTTATGAGGCATTCCATCCTGACATTGTATT 221 Query 12817 ATTGCCTGGCTGTGCTGTTGATTTTACAAATAGTAGGTTAAGTAATGTACTAGGAATTAG 12876 ||||||| || | || || ||||| | || | | || || | || || || || Sbjct 220 GCTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGACTTAGCAACTTGCTTGGCATCAG 161 Query 12877 AAAAAGGTTTCCTTTTCAAAAAGGATTTATTATAACTTATGAAGAT-TTAAAGGG 12930 || || ||| || || | || || | || | ||||||||| || ||||| Sbjct 160 GAAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGTATGAAGATCTTGAAGGG 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94509480263568