Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_030874.1 Length=29162 Score E Sequences producing significant alignments: (Bits) Value seq16058 356 4e-94 seq15970 145 1e-30 >seq16058 Length=1913 Score = 356 bits (394), Expect = 4e-94 Identities = 589/841 (70%), Gaps = 8/841 (1%) Strand=Plus/Plus Query 17295 ATGGATAATGTAAATCCATTTAATCATCACAGAAATCCTGGTTTAAGATACAGATCCCAA 17354 ||||| ||||| ||||||||||| || ||| | ||| |||| || | ||| | ||| Sbjct 105 ATGGACAATGTGAATCCATTTAACCACCACCGGAATGCTGGCCTACGCTACCGGTCCATG 164 Query 17355 CTTTTAGGAAATGGAAGAATTTGTGAATTTC-ATATTCAAGTTCCTCAAAAATTTTTTGC 17413 ||| | || ||||| | | |||| |||| | || ||||| ||||||||||| ||||| Sbjct 165 CTTCTGGGCAATGGCCGT-TATGTGCCTTTCCACATACAAGTGCCTCAAAAATTCTTTGC 223 Query 17414 TATAAAAAATTTACTTCTTTTGCCTGGTACTTATACTTATGAATGGGCCTTTCGAAAAGA 17473 | | || || |||||||| | ||||| | || || ||||| ||| ||| |||| | Sbjct 224 TGTCAAGAACCTACTTCTTCTACCTGGCTCCTACACCTATGAGTGGAACTTCAGAAAGGG 283 Query 17474 TGTTAATATGATTTTGCAAAGTACATTAGGAAATGATTTAAGAGCAGATGGGGCAACTAT 17533 ||| || ||| | |||||||| | | |||||||| | ||| ||||||| || | || Sbjct 284 TGTGAACATGGTCCTGCAAAGTTCCCTTGGAAATGACCTCAGAACAGATGGTGCTAACAT 343 Query 17534 AACCATCAATAGTGTAAATTTGTATGCAAGTTTTTTCCCAATGTCCCATAATACTGCTTC 17593 || ||| || | || | ||||| | || ||||| ||| | || || || ||||| Sbjct 344 AAGTTTCACCAGCATCAACCTCTATGCCACCTTCTTCCCCATGGCTCACAACACCGCTTC 403 Query 17594 TACTTTAGAAGCAATGTTAAGAAATGAAACAAATGATCAAACATTTAATGATTATTTGTC 17653 ||| | ||||| ||| | | || || || |||||||| |||| || || || | || Sbjct 404 AACTCTTGAAGCCATGCTGCGCAACGATACCAATGATCAGTCATTCAACGACTACCTCTC 463 Query 17654 TTCTGCTAATATGCTTTATCCCATTCCTCCTAAGGCTACTCAAC-TTCCTATTTCAATTC 17712 | | ||||| |||||||| ||||| ||| | || || || |||| |||| ||||| || | Sbjct 464 TGCAGCTAACATGCTTTACCCCATCCCTGCCAATGCAAC-CAACATTCCAATTTCCATCC 522 Query 17713 CATCTAGAAATTGGGCTGCTTTTAGAGGATGGAGTTTTACTAGAATAAAACAAAAAGAAA 17772 ||||| | || ||||| || || || || ||| || || ||| | ||| || || | Sbjct 523 CATCTCGCAACTGGGCAGCCTTCAGGGGCTGGTCCTTCACCAGACTCAAAACCAAGGAGA 582 Query 17773 CTCCAGCCTTAGGTTCTCCATTTGATCCTTATTTCACTTATTCTGGAAGTATTCCCTATT 17832 ||||| | | || || || ||||| || ||| |||||||||| ||||||||| Sbjct 583 CTCCATCTCTTGGATCAGGGTTCGATCCCTACTTCGTTTATTCTGGATCTATTCCCTACC 642 Query 17833 TAGATGGAACATTTTATTTGAACCATACCTT-TAGAAGAGTTGCAATTCA-ATTTGATTC 17890 | ||||| || ||||| | ||||| || || ||||| | | || ||| ||||| || Sbjct 643 TGGATGGCACTTTTTACCTTAACCACACTTTCAAGAAGGGCTCCA--TCATGTTTGACTC 700 Query 17891 TTCTGTAAGTTGGCCAGGAAATGATAGACTTTTGACACCTAATGAATTTGAAATTAAAAG 17950 || || || ||||| || ||||| || || ||| | || ||||| |||||||| || | Sbjct 701 CTCAGTCAGCTGGCCTGGCAATGACAGGCTGTTGTCTCCAAATGAGTTTGAAATCAAGCG 760 Query 17951 AACAGTTGATGGAGAAGGTTATACCACTGCTCAAAGCACTATTACTAAAGACTGGTTTTT 18010 || || ||||| ||||| || | || ||| ||| || || ||||||||||| | Sbjct 761 CACTGTGGATGGGGAAGGATACAATGTGGCCCAATGCAACATGACCAAAGACTGGTTCCT 820 Query 18011 AGTGCAAATGTTGGCTAATTATAATATTGGTTATCAAGGTTATTATTTACCTGATGAATA 18070 || || ||| | || || || || ||||| || || || | ||| | ||||| | ||| Sbjct 821 GGTTCAGATGCTTGCCAACTACAACATTGGCTACCAGGGCTTTTACATCCCTGAGGGATA 880 Query 18071 CAAAGAAAAAAGTTATTCCTTTTTGAAAAATTTTACTCCTATGTGTAGACAAGTAGTAGA 18130 ||| || | || |||||||| | ||| || |||||| | || || || || || Sbjct 881 CAAGGATCGCATGTACTCCTTTTTCAGAAACTTCCAGCCTATGAGCAGGCAGGTGGTTGA 940 Query 18131 T 18131 | Sbjct 941 T 941 >seq15970 Length=4606 Score = 145 bits (160), Expect = 1e-30 Identities = 253/368 (69%), Gaps = 0/368 (0%) Strand=Plus/Minus Query 12426 TATAAATGGTTTGATTTAACTATACCAGAGGGTAATTTTTCCTTAATAATGGTTTTAGAA 12485 ||| | ||| |||| || | | ||||||| || || ||||| | ||| | || Sbjct 459 TATGAGTGGGTTGAGTTCATTTTACCAGAAGGCAACTTTTCAGCCACCATGACGATCGAC 400 Query 12486 CTTATGAATAATGCAATAGTTGAAAATTATATGAAAGTAGGTAGACAATATGGAGTTAAA 12545 || ||||| ||||| || |||| || || || || | || ||||| ||||||| Sbjct 399 CTGATGAACAATGCCATCATTGACAACTACCTGGAAATTGGCAGACAGAATGGAGTGCTG 340 Query 12546 GAGGAGGATATAGGTATTAAATTTGACACTAGAAATTTTAAACTTGGATGGGATCCTGAA 12605 || || || ||| |||| ||||||||||||||||| | || || ||||| || ||| Sbjct 339 GAAAGTGACATTGGTGTTAAGTTTGACACTAGAAATTTCAGGCTCGGGTGGGACCCCGAA 280 Query 12606 AAAAGATTAGTTGCTCCAGGTGTATATACTTATGAAGCTTTTCATCCAGATATTGTTTTA 12665 | | || || ||||| || || |||||||| || || ||||| || ||||| || Sbjct 279 ACTAAGTTGATTATGCCAGGAGTCTACACTTATGAGGCATTCCATCCTGACATTGTATTG 220 Query 12666 CTACCAAATTGTGCTGTAGATTTTACTAACAGTCGTTTAAGTAACTTATTAGGGATTAGA 12725 || || ||| | ||||| |||||| | || || | || ||||| | || || || Sbjct 219 CTGCCTGGTTGCGGGGTAGACTTTACTGAAAGCCGACTTAGCAACTTGCTTGGCATCAGG 160 Query 12726 AAAAGATTTCCATTTCAAAAAGGTTTTATAATTACTTATGAAGATTTAAGAGGAGGTAAT 12785 || ||| |||||| || | ||||| | ||| | ||||||||| | ||| ||| || Sbjct 159 AAGAGACATCCATTCCAGGAGGGTTTCAAAATCATGTATGAAGATCTTGAAGGGGGTGAT 100 Query 12786 ATTCCAGC 12793 ||||| || Sbjct 99 ATTCCTGC 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93169079077824