Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5310 237 2e-57 seq4842 84.2 3e-11 >seq5310 Length=161011 Score = 237 bits (262), Expect = 2e-57 Identities = 635/968 (66%), Gaps = 42/968 (4%) Strand=Plus/Plus Query 47826 TCTT-CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATT 47884 |||| || |||||||||| || |||||||||||| || || || || ||||| || Sbjct 62627 TCTTGCTCGAGACATAACACCAGCACGTTGATATTCACCAACCCGCTTTTCAAAAAAGTT 62686 Query 47885 AGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944 || |||||||| | ||||||||||||||||||||||| |||||| | | | |||||| Sbjct 62687 CGTCTTGCCTTCTATGGATATATTTTCCATAAAATCAAAAGGATTATCAGAGTGATAAAT 62746 Query 47945 tttt----------ttAAATCCTAA------------TTCTGAA------------ATCA 47970 | ||||| | || ||| || | || Sbjct 62747 CTAAACAGAAACAATTAAAACGAAAACCACAAACTTTTTCGTAACCGAGTTCAACCAGCA 62806 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | | ||| |||| |||||| ||||| ||| | | ||||||||||| || | Sbjct 62807 GCCGATCAGCAATGAATTCAATATACTGGCACATTAGCTTGCAATTCATTCCAATTAAAC 62866 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | ||||| | || || | ||||||||||||||||| || || ||| || |||| Sbjct 62867 TGACTGGCAAGGCTTCAGACAGAAACTCTTGTTCGATTAGCACCGCCTCCTTCATAATCG 62926 Query 48091 ATGTTAC-CGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAA 48149 | || || ||| | | || | | || ||||||| | ||| || || Sbjct 62927 ACTCAACGCGAACCCTAGAAGGCTTTTTAATA-ATGTGCTTAAACAGAAGACAAGCGAAG 62985 Query 48150 TCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 |||||||| | ||||| |||||||| ||||| || ||| ||| | | || ||||| Sbjct 62986 TCACAATGTAATCCTTCGTCTCTACTGATTAACTCATTACTAAAGGACAATCCAGGCATA 63045 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 ||||| || || || ||||||||||| |||||||| || || || || | |||||| Sbjct 63046 AGTCCTCGCTTCTTCAGCCAAAATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCT 63105 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTTCG--TTGTGTATCCACCGT 48326 || || ||||| || | | ||| | | | | ||| | | ||||| Sbjct 63106 ACTGCTGCAAAGGCAACCAAGCGTTCTGCAAACGTAGACTTAGAATCACCAATCCAATCC 63165 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAAGAGAAA 48385 |||||| | ||| || ||| |||||||| | ||| || |||||||| || ||||| Sbjct 63166 AATGCCCATTGAGCTTTTTTCGCTACACAAGTTAG-GTTGCTTATAGCATTGAAAAGAAA 63224 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 || | |||| || ||||| | || ||||| |||| ||| |||||||| || || Sbjct 63225 GTCTCTTTCTTTAGAGTCTTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGAATG 63284 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||||| || || || ||||| | || |||||||| | | || | |||||||||||| Sbjct 63285 AATATTCTCGATAGCTATCTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTC 63344 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 || ||| ||||| || || || |||||||||||||| || ||||| ||||| Sbjct 63345 TTGACTAAAGCGTTCCAGTAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGC 63404 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 || |||| | ||||||| ||| | ||| | ||| | ||| || Sbjct 63405 CAACACATATGATATAAAATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTC 63464 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685 ||| || | ||| || ||||| | ||||| || || ||| | || ||||| || | || Sbjct 63465 TTTGGACAAATCCACCTCTTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATG 63524 Query 48686 CCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGAT 48745 ||| |||||| |||| || ||||||| |||||| | | ||| ||| | ||| | Sbjct 63525 CCAGATATCATGATATTCTATGGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAAGCAA 63584 Query 48746 AGGTTCCA 48753 ||||||| Sbjct 63585 GGGTTCCA 63592 >seq4842 Length=69696 Score = 84.2 bits (92), Expect = 3e-11 Identities = 202/306 (66%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 |||||||| ||| || |||||||| || ||||| | ||| ||| || || || Sbjct 44114 TTCATATTTCTCATACAGAGCTTCAAATTTTTCACCCCACAGTTCAGGCAAGCCTGGACA 44173 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| || ||| | | ||| | | | | | | || || |||||| | || Sbjct 44174 TTCATGAGGATCCATTAGCGTCCACTTATCGTTTGATTCGACCCGACGCATAAACAAGTC 44233 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 ||||||||| || |||| ||||| ||| || | | | |||||| || ||||| || Sbjct 44234 AGGTATCCAGAGTGCAAAAAATAAATCCCGTGCACGAATTTCTTCTGCACCAGTATTTTT 44293 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | || | |||| | | ||||| |||||| ||||| || ||||| || | | Sbjct 44294 CCGCATTTCTATGAACTGAAACACATCAGGATGCCAAGGTTCCAGGTATATAGCAAAGGC 44353 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 |||||| || || ||||| || || || | ||||| || || | || | || | ||| Sbjct 44354 TCCAGGGCGCTTGTTACCCCCTTGGTCAACATATCGTGCAGTACTGTTGAATACACGCAA 44413 Query 78203 CATTGG 78208 |||||| Sbjct 44414 CATTGG 44419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694451299198720