Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5310 286 5e-72 seq4842 104 3e-17 >seq5310 Length=161011 Score = 286 bits (316), Expect = 5e-72 Identities = 633/947 (67%), Gaps = 53/947 (6%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || || || ||||| || || |||||||| | ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 46401 CATAAAATCAAACGGATTA---------------------GTAACATT------------ 46427 |||||||||||| |||||| | |||| | Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 46428 -ATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 | ||| ||||| | || | ||| | ||| | ||| |||| |||||| |||||| Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 ||| | | ||||||||||| || | |||| || | || || | ||||||| Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 ||||||| || || || ||| || ||||| || || || | || | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACC---CTAGAAGGCT 62950 Query 46607 GCATCA-AATGT--TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTAC 46663 | | ||||| ||||||| | ||| || || |||||||| | ||||| ||||||| Sbjct 62951 TTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTCTAC 63010 Query 46664 TAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATA 46723 | ||||| || ||| ||| | | |||||||| ||||| ||||| || |||||||||| Sbjct 63011 TGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAAATA 63070 Query 46724 TAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCT 46783 |||||||||| || || || || | |||||||| || || || || || | | | Sbjct 63071 TAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGCGTT 63130 Query 46784 CTCC----GTA-ACTGGCATCATTATGAATCCA--CCTTTGAGCCCAATCAGCCTTTTTC 46836 || | ||| ||| | || | |||||| || || |||| | ||| |||||| Sbjct 63131 CTGCAAACGTAGACTTAGA--ATCACCAATCCAATCCAATG--CCCATTGAGCTTTTTTC 63186 Query 46837 TTTACACAAGGCATTGTTTCT-ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTT 46895 |||||||| | ||| || |||||||| || ||||||| | |||| | | ||||| Sbjct 63187 GCTACACAAGTTAG-GTTGCTTATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTCTTT 63245 Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 | ||| ||||| |||| ||| |||||||| |||||||| || || ||||| ||||| Sbjct 63246 GATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTATCTG 63305 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA 47015 | || |||||||| | | || | |||||||||||| || ||| ||||| || Sbjct 63306 CATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAGTAA 63365 Query 47016 ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATA 47075 || || |||||||||||||| || ||||| |||||||| |||| | ||||||| Sbjct 63366 GTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAAATG 63425 Query 47076 TTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTC 47135 ||| | | ||| | ||| | ||| ||||| || | ||| || ||||| Sbjct 63426 ACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTCTTC 63485 Query 47136 AGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGAT 47195 | |||||||| || ||| | || ||||| || | || ||| |||||| |||||| || Sbjct 63486 TACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTCTAT 63545 Query 47196 CGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTCCA 47242 || |||| |||||| | | ||| ||| | ||| | ||||||| Sbjct 63546 GGGGAAAAGAACAAAACGGTGTGGGTTTGGTTTAAGCAAGGGTTCCA 63592 >seq4842 Length=69696 Score = 104 bits (114), Expect = 3e-17 Identities = 194/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||| || ||||| | ||| ||| || |||||||||| ||| ||| | | Sbjct 44135 TTCAAATTTTTCACCCCACAGTTCAGGCAAGCCTGGACATTCATGAGGATCCATTAGCGT 44194 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||||| | | | | | ||||| |||||| | ||||||||||| || |||| ||| Sbjct 44195 CCACTTATCGTTTGATTCGACCCGACGCATAAACAAGTCAGGTATCCAGAGTGCAAAAAA 44254 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCAT 76698 || ||| || | | | |||||| || ||||| || | |||| ||||| | Sbjct 44255 TAAATCCCGTGCACGAATTTCTTCTGCACCAGTATTTTTCCGCATTTCTATGAACTGAAA 44314 Query 76699 AATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCC 76758 | ||||| |||||| ||||| || ||||| || | | || || || || ||||| || Sbjct 44315 CACATCAGGATGCCAAGGTTCCAGGTATATAGCAAAGGCTCCAGGGCGCTTGTTACCCCC 44374 Query 76759 CTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG 76803 || || | ||||| ||||| | || | || | ||||||||| Sbjct 44375 TTGGTCAACATATCGTGCAGTACTGTTGAATACACGCAACATTGG 44419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712711180239360