Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4755 89.7 1e-12 seq4124 86.0 1e-11 >seq4755 Length=318840 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| || | ||||| | ||||| || | Sbjct 280113 CAAG-TGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCA 280055 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | | || || || | | ||||| ||||| || || | Sbjct 280054 GCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGA 279995 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||| ||| |||| | |||| ||| ||| ||||| | |||||| || | Sbjct 279994 TCTTAGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCT 279938 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| || | |||||| Sbjct 279937 TACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| || | ||||| | ||||| || | Sbjct 280341 CAAG-TGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCA 280283 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | | || || || | | ||||| ||||| || || | Sbjct 280282 GCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGA 280223 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||| ||| |||| | |||| ||| ||| ||||| | |||||| || | Sbjct 280222 TCTTAGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCT 280166 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| || | |||||| Sbjct 280165 TACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| |||||||||||||| || | ||||| | ||||| || | Sbjct 280569 CAAG-TGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTCCA 280511 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || ||||| | | || || || | | ||||| ||||| || || | Sbjct 280510 GCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTGGA 280451 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTT 152073 | || ||| ||| |||| | |||| ||| ||| ||||| | |||||| || | Sbjct 280450 TCTTAGCTTTCACATTCTCAATAGTGTC---ACTTGGCTCAACTTCCAAAGTAATCGTCT 280394 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||||||||| || | |||||| Sbjct 280393 TACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq4124 Length=298687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || | ||| ||||| || || |||||||| || | ||| || | |||||| Sbjct 13609 AGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCT 13668 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || ||||| || | | || ||||| | | || ||||| || ||| Sbjct 13669 TCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCT 13728 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || ||| |||| | |||| | ||| || || | || || || Sbjct 13729 TGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTC 13788 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | |||||||| |||| |||||| Sbjct 13789 TTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153450507175208