Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_031503.1 Length=41981 Score E Sequences producing significant alignments: (Bits) Value seq16058 104 6e-18 >seq16058 Length=1913 Score = 104 bits (114), Expect = 6e-18 Identities = 493/773 (64%), Gaps = 24/773 (3%) Strand=Plus/Plus Query 21111 GGTGGTCGGTAGATCAAATGGATAATGTTAACCCCTTCAATCACCACCGTAATTGGGGTC 21170 ||||||| | || | |||||| ||||| || || || || |||||||| ||| || | Sbjct 88 GGTGGTCTCTTGACCCAATGGACAATGTGAATCCATTTAACCACCACCGGAATGCTGGCC 147 Query 21171 TTAAGTATCGTTCACAACTCTTGGGGAACAGCAGATACTGTCAGTTTC-ACATTCAGGTC 21229 | || || || || |||| || || | || ||| |||| |||| || || Sbjct 148 TACGCTACCGGTCCATGCTTCTGGGCAATGGCCGTTA-TGTGCCTTTCCACATACAAGTG 206 Query 21230 CCCCAAAAATACTTTGCTATAAAAAATCTTTTATTGCTTCCCGGGACGTATACTTATGAG 21289 || ||||||| ||||||| | || || || | | || || || | || || |||||| Sbjct 207 CCTCAAAAATTCTTTGCTGTCAAGAACCTACTTCTTCTACCTGGCTCCTACACCTATGAG 266 Query 21290 TGGGTGTTGCGCAAAGACCCGAACATGATTCTCCAATCATCCCTTGGCAACGACCTACGT 21349 ||| || | || | ||||||| | || ||| |||||||| || ||||| | Sbjct 267 TGGAACTTCAGAAAGGGTGTGAACATGGTCCTGCAAAGTTCCCTTGGAAATGACCTCAGA 326 Query 21350 TTGGACGGAGCTTCGATA-GTATATTCAGAGGTTAACCTGATGGCCAATTTTATGCCTAT 21408 || || ||| ||| || | ||| | ||||| |||| || | || || Sbjct 327 ACAGATGGTGCTAACATAAGTTTCACCAGCA-TCAACCTCTATGCCACCTTCTTCCCCAT 385 Query 21409 GGATCATAATACCAGTAATCAACT--TGAACTGATGCTTCGGAATGCGACTAATGATCAG 21466 || ||| || ||| | |||||| |||| ||||| || || | || ||||||||| Sbjct 386 GGCTCACAACACCGCT--TCAACTCTTGAAGCCATGCTGCGCAACGATACCAATGATCAG 443 Query 21467 ACATTCGCTGACTATTTAGGCGCAAAAAACGCGTTGTACAGCGTACCTGCGGGTTCGACT 21526 ||||| ||||| | ||| ||| | | ||| | | ||||| | | || Sbjct 444 TCATTCAACGACTACCTCTCTGCAGCTAACATGCTTTACCCCATCCCTGCCAATGCAACC 503 Query 21527 GCTCTAACCATAAATGTTCCGGCTCGCACATGGGAAGGAATGAGAGGGTGGTCTTTTACC 21586 | | || | || |||||| |||| || | || || ||||| || ||| Sbjct 504 AACATTCCAATTTCCATCCCATCTCGCAACTGGGCAGCCTTCAGGGGCTGGTCCTTCACC 563 Query 21587 CGCCTCAAAACATCTGAAACACCTCAACAGGGAGCGCAATACGATGCCTCCTTTCAATAT 21646 | |||||||| || || || | ||| | | |||| ||| ||| ||| Sbjct 564 AGACTCAAAACCAAGGAGACTCCATCTCTTGGATCAGGGTTCGATCCCTACTTCGTTTAT 623 Query 21647 TCTGGTTCGATTCCATACTTAGACGGTACGTTTTACCTCAACCATACTTTCCGTAACATG 21706 ||||| || ||||| ||| | || || || |||||||| ||||| |||||| || | | Sbjct 624 TCTGGATCTATTCCCTACCTGGATGGCACTTTTTACCTTAACCACACTTTC---AAGAAG 680 Query 21707 AGCG---TGCTGTTTGATACCAGCATTAATTGGCCGGGAAATGACCGGCTGCTGACACCG 21763 || | ||||||| || | | ||||| || |||||| ||||| || | || Sbjct 681 GGCTCCATCATGTTTGACTCCTCAGTCAGCTGGCCTGGCAATGACAGGCTGTTGTCTCCA 740 Query 21764 AACGTATTTGAAATTAAGCGCGCTCCTGGACTGGATCCCGAGAATTATACTATGT--CAC 21821 || | |||||||| |||||| || ||||| | ||| |||| |||| | | Sbjct 741 AATGAGTTTGAAATCAAGCGCACTG------TGGATG--GGGAAGGATACAATGTGGCCC 792 Query 21822 AATCATCCATAACAAAAGACTGGTACCTCATACAAATGGCAACCAACTACAAC 21874 ||| ||| || |||||||||| ||| | || ||| ||||||||||| Sbjct 793 AATGCAACATGACCAAAGACTGGTTCCTGGTTCAGATGCTTGCCAACTACAAC 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134177677645968