Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq4755 183 6e-41 seq4124 170 4e-37 seq11996 105 1e-17 >seq4755 Length=318840 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||| || || ||||||||||||||||||| Sbjct 279906 ACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 279847 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || || |||||||| ||||||||||| || || Sbjct 279846 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 279787 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| ||||| || | || |||||||| | || || Sbjct 279786 AATCCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 279727 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | ||| ||||||||||| |||| |||||| || |||||||||||| Sbjct 279726 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTTACAAATATCTGCATT 279678 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||| || || ||||||||||||||||||| Sbjct 280134 ACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 280075 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || || |||||||| ||||||||||| || || Sbjct 280074 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280015 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| ||||| || | || |||||||| | || || Sbjct 280014 AATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 279955 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| ||||||||||| |||| |||||| || ||||||||||| Sbjct 279954 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| |||| || || ||||||||||||||||||| Sbjct 280362 ACCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGA 280303 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| |||||||| || || || || |||||||| ||||||||||| || || Sbjct 280302 CAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGG 280243 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| ||||| || | || |||||||| | || || Sbjct 280242 AATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 280183 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| ||||||||||| |||| |||||| || ||||||||||| Sbjct 280182 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| || || || | |||| || | || || ||||||||||||||||||| Sbjct 280591 AACCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAG 280532 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | ||||| |||||||| || || || || |||||||| ||||||||||| || | Sbjct 280531 ACAAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAG 280472 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||| || |||||||| ||||| || | || |||||||| | || | Sbjct 280471 GAATTCCCTCCTTATCCTGGATCTTAGCTTTCACATTCTCAATAGTGTCACTTGGCTCAA 280412 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| | ||| ||||||||||| |||| |||||| || ||||||||||| Sbjct 280411 CTTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 >seq4124 Length=298687 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 14505 ACCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGA 14564 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | ||||| || || || |||||||||||||||||| || Sbjct 14565 TAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 14624 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || |||||||| || ||||| || | || || ||||| || || || Sbjct 14625 AATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14684 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || |||||||| |||||||||||||||||||| ||||||||| Sbjct 14685 CTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCATT 14733 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 13821 ACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGA 13880 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | ||||| || || || |||||||||||||||||| || Sbjct 13881 TAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 13940 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || |||||||| || ||||| || | || || ||||| || || || Sbjct 13941 AATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14000 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||| ||||| || || |||||||| Sbjct 14001 CTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 14049 ACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGA 14108 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | ||||| || || || |||||||||||||||||| || Sbjct 14109 TAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 14168 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || |||||||| || ||||| || | || || ||||| || || || Sbjct 14169 AATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14228 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| |||||||| ||||| || || |||||||| Sbjct 14229 CTCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || ||||| || || || || ||||||||||||| Sbjct 14277 ACCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGA 14336 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||| || ||||| || | ||||| || || || |||||||||||||||||| || Sbjct 14337 TAACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 14396 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || |||||||| || || || || | || || ||||| || || || Sbjct 14397 AATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAAC 14456 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||| ||||| || || |||||||| Sbjct 14457 CTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| || || ||||| || || || || ||||||||||||| Sbjct 13594 CCACCACGAAGACGAAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13653 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||| || ||||| || | ||||| || || || |||||||||||||||||| ||| Sbjct 13654 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13713 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || || ||||| || || || || || | || || ||||| || || || Sbjct 13714 ATACCTTCTTTATCTTGAATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 13773 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| |||||||| ||||| || || |||||||| Sbjct 13774 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 13820 >seq11996 Length=10337 Score = 105 bits (116), Expect = 1e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 || || ||||| || || || || |||||||||||| | ||| || ||||| || Sbjct 10336 ACAAGGTGTAAAGTAGACTCCTTCTGAGTGTTGTAGTCAGATAACGTACGACCATCTTCC 10277 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| | || || || |||||||||||||||||| |||||||| || || ||||| Sbjct 10276 AACTGTGTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGA 10217 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGT-CCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || || ||||| || | || || |||| | || || || || | ||||| | ||| Sbjct 10216 ATTTTCGCTTTCACATTCTCAATCGTGTGCACTAGGCTCAACCTCCAATGTGATTGGCTT 10157 Query 283070 ACCCGTCAAAGT-CTTAACGAATATCTGCATTTTC 283103 |||| ||| || ||| || || || ||||||||| Sbjct 10156 CCCCGGCAATGTGCTTCACAAAGATTTGCATTTTC 10122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046403272605392