Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11652 376 3e-99 seq2652 345 4e-90 seq5310 215 5e-51 >seq11652 Length=5345 Score = 376 bits (416), Expect = 3e-99 Identities = 247/273 (90%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| | Sbjct 1120 TCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCTG 1179 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||| |||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1180 CCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGC 1239 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 | |||||||| || | |||||||||||||||||||||||| |||||||||||||||||| Sbjct 1240 ACGCCACCACACCTGGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGG 1299 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| Sbjct 1300 CCAGGCTGGTCTCGAACTCCTGACCTCAAGCAATCCACCTGCCTCGGCCTCCCAAAGTGC 1359 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCC 8616 ||||||||||||| ||||||||||| || |||| Sbjct 1360 TGGGATTACAGGCCTGAGCCACCGCACCCGGCC 1392 Score = 273 bits (302), Expect = 2e-68 Identities = 219/263 (83%), Gaps = 1/263 (0%) Strand=Plus/Plus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||| ||||||||||| || ||||||| |||||| ||||||||||||||| || ||| Sbjct 128 CTCTGTCGCCCAGGCTGGTGTACAGTGGCACGATCTCAGCTCACTGCAACCTCTGCTTCC 187 Query 8409 CGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC 8468 | | |||||| |||||||||||||||| ||| ||||||||||||||||| | ||| Sbjct 188 CAGATTCAAGTGATTCTCCTGCCTCAGCTTCCTGAGTAGCTGGGATTACAAGTGCCCGCC 247 Query 8469 ACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGG 8528 | ||| || |||||||| ||| |||||||||||| ||||||||||||||||| | || Sbjct 248 AACACACCTGTCTAATTTTCGTA-TTTTAGTAGAGATGGGGTTTCACCATGTTGGTCGGG 306 Query 8529 CTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGA 8588 |||||||||||| ||| |||||| ||||| || |||||||| ||||||||||||||| Sbjct 307 CTGGTCTCGAACCCCTTACCTCAAATGATCTGCCCACCTCGGCCCCCCAAAGTGCTGGGA 366 Query 8589 TTACAGGCATGAGCCACCGCGCC 8611 ||||||| |||||||| | ||| Sbjct 367 TTACAGGAGTGAGCCACGGTGCC 389 Score = 260 bits (288), Expect = 1e-64 Identities = 211/253 (83%), Gaps = 12/253 (5%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| ||||||||||||||||||||||||| ||| ||||| ||||||||||| ||||| Sbjct 1561 TCTCGCTCTGTTGCCCAGGCTGGAGTGCAGAGGCACGATCTTGGCTCACTGCAAGCTCCG 1620 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||||||||||| || |||| ||||||||||||||| |||||||||||| ||||||| Sbjct 1621 CCTCCCGGGTTCACGCCATTCCCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGC 1680 Query 8464 AAGCCACCACGCCAAGCTAA-TTTTTGTA--------TTTTTAGTAGAGAGAGGGTTTCA 8514 | ||||||||| ||||| |||||||| |||||||| |||| ||||||| Sbjct 1681 CTGTCACCACGCCCGGCTAATTTTTTGTATTTTTTTTTTTTTAGTGGAGACGGGGTTTCT 1740 Query 8515 CCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTC 8574 || |||| |||||| ||||||||||||||||| ||| ||||||| || ||| | ||||| Sbjct 1741 CCGTGTTAGCCAGGATGGTCTCGAACTCCTGA-CTC--GTGATCCGCCCGCCACAGCCTC 1797 Query 8575 CCAAAGTGCTGGG 8587 ||||||||||||| Sbjct 1798 CCAAAGTGCTGGG 1810 Score = 197 bits (218), Expect = 1e-45 Identities = 206/269 (77%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||| |||||||| |||||| ||||||||||||| ||||| ||||| | |||||||| Sbjct 2625 TCTGACTCTGTTACCCAGGTTGGAGTGCAGTGGTGCAATCTCTGCTCAATACAACCTCCA 2566 Query 8404 CCTCCC-GGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCA 8462 |||||| ||| ||||| ||||||| |||||||| || || |||||||| | ||| Sbjct 2565 CCTCCCAGGGCTCAAGTGATTCTCCCACCTCAGCCACCCTAGCAGCTGGGAACATAGGTG 2506 Query 8463 AAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTG 8522 ||||||| ||| ||| |||||| |||||||| ||||||| |||||||||||||| Sbjct 2505 TGCGCCACCATGCCCAGCGAATTTTGGTATTTTTTGTAGAGACGAGGTTTCACCATGTT- 2447 Query 8523 GCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTG 8582 ||||| |||||||| |||| |||| | |||| ||| ||||| ||||| || Sbjct 2446 -----GCTGGCCTCGAACTTCTGAACTCAAGCAATCCTTTCACCTTGGCCTTCCAAATTG 2392 Query 8583 CTGGGATTACAGGCATGAGCCACCGCGCC 8611 |||| ||||||||| |||||| | ||| Sbjct 2391 CTGG---TACAGGCATAAGCCACTGTGCC 2366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 ||||||||||| |||||||||| ||||||||| |||| |||||||| | |||| Sbjct 3152 TCTCACTCTGTCACCCAGGCTGGCGTGCAGTGGTGCGATCAGAGCTCACTGTAGCCTCAA 3093 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTG 8450 |||| || |||||| | || |||||||||||||| ||||||||| Sbjct 3092 GCTCCTAGGCTCAAGCGGTCCTACTGCCTCAGCCTCCCGAGTAGCTG 3046 >seq2652 Length=3047 Score = 345 bits (382), Expect = 4e-90 Identities = 241/274 (88%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||||||||||||||||||||||||| |||| ||||||||||||||| | Sbjct 2556 TCTCGTTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTAGCTCACTGCAACCTCTG 2615 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| ||||||||| |||||| ||||||||||||| ||||||||||||||||||| Sbjct 2616 CCTCCTGGGTTCAAGAAATTCTCATGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGC 2675 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTTGG 8523 ||||||||||| ||||||||||||||||||||||||| | | |||||||||| ||||| Sbjct 2676 CCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAAACAAGGTTTCACCACGTTGG 2735 Query 8524 CCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGC 8583 ||||||||||||| |||||||||||| | ||||||||||||||| |||| |||||||||| Sbjct 2736 CCAGGCTGGTCTCAAACTCCTGACCTGAAGTGATCCACCTGCCTTGGCCACCCAAAGTGC 2795 Query 8584 TGGGATTACAGGCATGAGCCACCGCGCCTGGCCC 8617 |||||||||| | ||||||||| |||| ||||| Sbjct 2796 TGGGATTACATGTGTGAGCCACCACGCCCGGCCC 2829 >seq5310 Length=161011 Score = 215 bits (238), Expect = 5e-51 Identities = 594/909 (65%), Gaps = 56/909 (6%) Strand=Plus/Plus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||||||||| ||||| || |||| ||||| || ||||| || |||| ||||||||||| Sbjct 62654 TTGATATTCACCAACCCGCTTTTCAAAAAAGTTCGTCTTGCCTTCTATGGATATATTTTC 62713 Query 23280 CATAAAATCAAATGGATTAGAAGTATTATATA------CAGC-----TTTACATGATAA- 23327 |||||||||||| |||||| || | ||| | ||| || | | || || Sbjct 62714 CATAAAATCAAAAGGATTATCAGAGTGATAAATCTAAACAGAAACAATTAAAACGAAAAC 62773 Query 23328 ----------TTCCT-------TTAAA-----AGCCTATCTGCTACAAATTCAATATATT 23365 ||| | || || |||| ||| || | ||||||||||| | Sbjct 62774 CACAAACTTTTTCGTAACCGAGTTCAACCAGCAGCCGATCAGCAATGAATTCAATATACT 62833 Query 23366 GACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATA 23425 | ||||| | | | || || || |||| | ||||| | || ||| | | || Sbjct 62834 GGCACATTAGCTTGCAATTCATTCCAATTAAACTGACTGGCAAGGCTTCAGACAGAAACT 62893 Query 23426 GTTTTTCAATGGAAACAGCATCTTTAATTATT---TGAACAATAACTTCTTCACTAGGTG 23482 || ||| || || || || || || || | ||| ||| |||| | Sbjct 62894 CTTGTTCGATTAGCACCGCCTCCTTCATAATCGACTCAACGCGAACC------CTAGAAG 62947 Query 23483 GATATTTTAAA---TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCC 23539 | | ||| | | | |||||||| | ||| || || |||||||||| ||||| || | Sbjct 62948 GCTTTTTAATAATGTGCTTAAACAGAAGACAAGCGAAGTCACAATGTAATCCTTCGTCTC 63007 Query 23540 TACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAA 23599 |||| || || |||||| ||| | ||||| ||||| | |||||| || || | ||||| Sbjct 63008 TACTGATTAACTCATTACTAAAGGACAATCCAGGCATAAGTCCTCGCTTCTTCAGCCAAA 63067 Query 23600 ATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGAC 23659 |||| || || || ||||| || |||| || || || || |||||||| || | | Sbjct 63068 ATATAGCCGCGAAGCTGCCGGAGAAAAAAACTCCTTCTACTGCTGCAAAGGCAACCAAGC 63127 Query 23660 GTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATT 23719 || |||| || | ||| ||||| |||||| | || ||| | ||| || || Sbjct 63128 GTTCTGCAAACGTAGACTTAGAATCACCAATCCAATCCAATGCCCATTGAGCTTT---TT 63184 Query 23720 T---TACACACTCAA--TTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATC 23774 | |||||| | ||| || || || || || ||||| | |||||| | || Sbjct 63185 TCGCTACACAAGTTAGGTTGCTT--ATAGCATTGAAAAGAAAGTCTCTTTCTTTAGAGTC 63242 Query 23775 TGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAAT 23834 | | ||||| ||||| ||||||| | |||||||||||||||||||| || ||||| || Sbjct 63243 TTTGATATACGTATCGATTAGTAGAGAGTACATTTCAGAATGAATATTCTCGATAGCTAT 63302 Query 23835 CTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGC 23894 ||| | |||||||||||| | | | || | | || || || | | ||| | || Sbjct 63303 CTGCATCCCATAAAAACAGCGAACCTCCGGGATCTGTACCTCTTGACTAAAGCGTTCCAG 63362 Query 23895 TAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAA 23954 ||| ||||| ||| || |||||||| || |||||||| || | |||||| |||||| Sbjct 63363 TAAGTTTTCTAGAACTATTCCATCACTCGCCGCAAAGAATGCCAACACATATGATATAAA 63422 Query 23955 ATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTC 24014 ||| | ||| || | | | ||||| | | ||||| || ||||| || || Sbjct 63423 ATGACGTTCCCCAACCTTAAGTGACTCCCAATGTGTGAAGTCTTTGGACAAATCCACCTC 63482 Query 24015 ATCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTG 24074 || || ||||| ||| |||| || || || | |||| ||||||| || || Sbjct 63483 TTCTACAGTCCAGAAAGAAGCCACCGCCTTTTTGTAGAAATGCCAGATATCATGATATTC 63542 Query 24075 TATTGGAAA 24083 ||| || || Sbjct 63543 TATGGGGAA 63551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521324722107200