Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq4755 116 3e-21 seq4124 87.8 1e-12 >seq4755 Length=318840 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| |||| ||||||| ||| || || |||||||||||||||||| || | Sbjct 280589 CCACCTCGAAGTCGTAACACCAAGTGCAGAGTCGACTCCTTTTGGATGTTGTAGTCAGAC 280530 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | ||| | || ||||||||||| || |||||||| ||||| || ||||| | ||| Sbjct 280529 AAAGTGCGACCATCCTCCAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGA 280470 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | ||| | || ||||| | || || Sbjct 280469 ATTCCCTCCTTATCCTGGATCTT-AGCTTTCACATTCTCAATAGTGTCACTTGGCTCAAC 280411 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| || || || |||||||| || || ||||| Sbjct 280410 TTCCAAAGTAATCGTCTTACCAGTCAGAGTCTTCACAAATATCTGCAT 280363 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||||||||||||||| || | | ||| | || || Sbjct 280116 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280057 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| ||||| || ||||| | ||| | || ||||| ||| Sbjct 280056 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 279997 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || ||||| | || || |||| |||||||||| Sbjct 279996 GATCTT-AGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCT 279938 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||| || || ||||| Sbjct 279937 TACCAGTCAGAGTCTTCACAAATATCTGCAT 279907 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||||||||||||||| || | | ||| | || || Sbjct 280344 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 280285 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| ||||| || ||||| | ||| | || ||||| ||| Sbjct 280284 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATTCCCTCCTTATCCTG 280225 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || ||||| | || || |||| |||||||||| Sbjct 280224 GATCTT-AGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCT 280166 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || |||||||| || || ||||| Sbjct 280165 TACCAGTCAGAGTCTTCACAAATATCTGCAT 280135 Score = 104 bits (114), Expect = 2e-17 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||||||||||||||| || | | ||| | || || Sbjct 279888 CACCAAGTGTAGAGTCGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGACCATCCTC 279829 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || |||||||| ||||| || ||||| | ||| | || ||||| ||| Sbjct 279828 CAGCTGCTTACCAGCAAAGATTAAACGTTGTTGATCGGGAGGAATCCCCTCCTTATCCTG 279769 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || ||||| | || || |||| |||||||||| Sbjct 279768 GATCTT-AGCTTTCACATTCTCAATAGTGTCACTTGGCTCAACTTCCAAAGTAATCGTCT 279710 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAATGAA 44349 | || || || ||||| || || || ||||| || |||||| Sbjct 279709 TACCAGTCAGAGTCTTTACAAATATCTGCAT--TGCCAATGAA 279669 >seq4124 Length=298687 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| || |||||||| || | | || | || |||| ||| || || || || Sbjct 14541 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 14600 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||||| || || || | ||| | |||||| || || || ||| |||| | | Sbjct 14601 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTATCTTGGATTTTC-GCTTTCACAT 14659 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | || ||||| | || ||||||| |||||||||||||||||| | ||||| | Sbjct 14660 TCTCAATCGTGTCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAA 14719 Query 44325 CGAAGATTTGCATGATGTGA 44344 |||| || ||||| ||||| Sbjct 14720 CGAAAATCTGCATTCTGTGA 14739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359880504830616