Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3731 102 2e-16 >seq3731 Length=1156867 Score = 102 bits (112), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| |||||||| || || || ||||| || || || || || || | || Sbjct 1054530 CAGATTTTTGTGAAAACACTTACGGGGAAAACTATAACGCTTGAAGTTGAGCCTGCTGAT 1054589 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || || || ||||| || ||||| || || || ||| Sbjct 1054590 ACAATTGAAGCAGTTAANGCTAAAATCCAAGATAAAGAGGGTATCCCACCAGATCAACAA 1054649 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| || || || ||||| || ||||||||||| || | | || |||||| | Sbjct 1054650 CGTCTTATTTTTGCTGGCAAACAACTGGAAGATGGAAGAACCGTCTCTGACTATAACATA 1054709 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||||| ||||| ||||||| || Sbjct 1054710 CAGTAAGAATCTACACTTCATCTTGGTT 1054737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203344889555312