Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20japonicum_20[genbank_20GCA_5F000151775.1_202009-04-21] 25,048 sequences; 402,743,189 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq4124 107 2e-18 >seq4124 Length=298687 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || | || ||||||||||||||| ||||| || Sbjct 14506 CCACCACGTAGACGGAGAACAAGGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCAGAT 14565 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||| || || |||||||||| || |||||||| | ||| Sbjct 14566 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14625 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || |||||| |||| | | ||||| || | ||| ||| Sbjct 14626 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14685 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| ||||| || ||||||| ||||| |||||||||||||| Sbjct 14686 TCCAACGTAATCGTCTTTCCCGTCAAAGTCTTAACGAAAATCTGCAT 14732 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || | || ||||||||||||||| ||||| || Sbjct 14278 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14337 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||| || || |||||||||| || |||||||| | ||| Sbjct 14338 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14397 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || |||||| ||||| | | ||||| || | ||| ||| Sbjct 14398 ATACCTTCTTTATCTTGGATTTTCGCCTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14457 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 14458 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || | || ||||||||||||||| ||||| || Sbjct 13822 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 13881 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||| || || |||||||||| || |||||||| | ||| Sbjct 13882 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 13941 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || |||||| |||| | | ||||| || | ||| ||| Sbjct 13942 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14001 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || ||||||| ||||| || || |||||||| Sbjct 14002 TCCAATGTGATCGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||||||||| ||||| || | || || | || || | ||| || || ||||| Sbjct 13629 CTCCTTCTGAATGTTGTAGTCAGATAACGTACGACCATCTTCCAACTGTTTACCAGCGAA 13688 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789 ||||| || |||||||| | |||| | || ||| | ||| |||| | ||||| Sbjct 13689 TATCAAACGTTGTTGGTCAGGAGGAATAC-CTTCTTTATCTTGAATTTTCGCCTTCACAT 13747 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | ||||| || | ||| ||||||| || ||||| || ||||||| ||||| | Sbjct 13748 TCTCAATCGTGTCACTAGGCTCAACCTCCAATGTGATCGTCTTCCCCGTCAATGTCTTCA 13807 Query 41850 CGAAAATCTGCAT 41862 | || |||||||| Sbjct 13808 CAAAGATCTGCAT 13820 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || | || ||||||||||||||| ||||| || Sbjct 14050 CCACCACGTAGACGGAGAACAAGGTGTAAAGTTGACTCCTTCTGAATGTTGTAGTCAGAT 14109 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || | ||| || || |||||||||| || |||||||| | ||| Sbjct 14110 AACGTACGACCATCTTCCAACTGTTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 14169 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | || || || |||||| |||| | | ||||| || | ||| ||| Sbjct 14170 ATACCTTCTTTATCTTGGATTTTCGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACC 14229 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || ||||||| ||||| || || |||||||| Sbjct 14230 TCCAATGTGATTGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 14276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462159252617600