Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq862 212 6e-50 >seq862 Length=148971 Score = 212 bits (234), Expect = 6e-50 Identities = 522/777 (67%), Gaps = 26/777 (3%) Strand=Plus/Minus Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834 || || ||||| | | || || || || | |||||| || || || ||||| |||| | Sbjct 30450 TAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTACTGACACATCAATTTG 30391 Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 || ||||| || || | | || || || ||||| | ||||| || ||||| | | Sbjct 30390 CAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGA 30331 Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 ||||| || |||| || | ||| |||| ||||| | || || | | ||| ||||| Sbjct 30330 ACCGCCTCTCTTATTATTGACT--CAACACGTTCTTTGGGAGGCTTTTTGATAATATGTT 30273 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||||| ||||| |||||||| ||||||| ||| |||||||| ||||| | ||| || Sbjct 30272 TAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGC 30213 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 ||| | || || ||||| ||||||||||| | ||| ||||| || || || | Sbjct 30212 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTAC 30153 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 ||||||| || | ||| || || | |||||| || | ||| ||||| || | || | | Sbjct 30152 CAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATT 30093 Query 17133 CTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCA----TC 17188 | || |||||| | |||||| || || |||| |||| || Sbjct 30092 TAGAATCACCAATCCAATCTAATGCCCACTGAGCCTT----TTTA-GCAACACAAGTTAA 30038 Query 17189 GTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATC 17244 ||| | |||||| || | | || || |||| || ||| ||| | || || ||||| Sbjct 30037 GTTGCTTATGGCGTTGAAGAGAAAGTCCCTTT---CTTTAGAGTCTTTGATGTATGTATC 29981 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || | || ||||||||| ||||| || ||||| || |||||||| | || || || Sbjct 29980 AATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAGAA 29921 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 || || | || | || || ||||| | ||| |||||| || || ||| || Sbjct 29920 ACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGGTTCTCGAGGAC 29861 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAAT-ATTTTTCGTC 17421 || ||||| ||||| || || || || || | || | | ||||||| | || | Sbjct 29860 AATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 29803 Query 17422 CGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 | ||| || | ||| | | ||||||||||||| ||| || ||||| ||||| Sbjct 29802 ACTTTTAAAGACTC-CCAATGTATGAAATCTTTGGATAAATCGACCTCTTCCACAGTCCA 29744 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| || || ||||| ||||| | || ||| | ||| | ||||| ||||||||| Sbjct 29743 AAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGAA 29687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517539874651800