Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq862 269 3e-67 >seq862 Length=148971 Score = 269 bits (298), Expect = 3e-67 Identities = 512/751 (68%), Gaps = 2/751 (0%) Strand=Plus/Minus Query 16034 CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT 16093 || || || | |||||| || || |||||||| || | |||||| || || || | | Sbjct 30429 CTGTCAGCGATAAATTCAATGTACTGACACATCAATTTGCAATTCATCCCAATTAAGCTG 30370 Query 16094 ACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCG 16153 || || || |||| | |||||| | |||||||||| |||||| ||| | || || Sbjct 30369 ACTGGTAGGGCTTCGGATAAAAACTCCTGTTCTATCAGAACCGCCTCTCTTATTATTGAC 30310 Query 16154 GTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCG 16213 | ||| || | || | | | | | |||||||||| |||||| ||||| || Sbjct 30309 TCAACACGTTCTTTGGGAGGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCA 30250 Query 16214 CAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 |||||||||||||||||||| ||||| | ||| ||| ||||| | || ||||| Sbjct 30249 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 30190 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 ||||||||||| | ||||||||| || ||||| || ||||| || | ||| || || Sbjct 30189 CCTCGTTTCTTAAGCCAGAATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACT 30130 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | ||||||||| | ||| ||||| || | |||| | || || |||||| | | Sbjct 30129 GCTGCAAAAGCAACTAAGCGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAAT 30070 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCT-ATGGCCTTAAACAATTTCTC 16452 |||| | || |||| | |||| | ||| || ||||| || || | || Sbjct 30069 GCCCACTGAGCCTTTTTAGCAACACAAGTTAA-GTTGCTTATGGCGTTGAAGAGAAAGTC 30011 Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512 |||| | | || | || || |||||||||| |||| ||||||||| ||||| || Sbjct 30010 CCTTTCTTTAGAGTCTTTGATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAAT 29951 Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC 16572 ||||| || |||||||| | |||||||| || ||| |||| | || || ||||| Sbjct 29950 ATTCTCGATAGCTATCTGCATCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTG 29891 Query 16573 GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAA 16632 | || |||||| |||||||| || || |||||||| || ||||| || || || Sbjct 29890 GCTGAAGCGTTCCAGGAGGTTCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAA 29831 Query 16633 TATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTT 16692 | || ||||||| ||| || | | | | | ||||| | | |||||||| Sbjct 29830 CACGTAGGATATGAAATGACGTTCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTT 29771 Query 16693 GGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCA 16752 ||||| ||| || ||||| |||||||| || || ||||| ||||| | | ||| Sbjct 29770 GGATAAATCGACCTCTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCA 29711 Query 16753 AATATCATTGTATTGTATGGGAAATACGACG 16783 | ||| | ||||| |||||| || | |||| Sbjct 29710 GACATCGTGGTATTCTATGGGGAAAAGGACG 29680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511408742478200