Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq862 242 4e-59 seq34 116 4e-21 >seq862 Length=148971 Score = 242 bits (268), Expect = 4e-59 Identities = 495/723 (68%), Gaps = 17/723 (2%) Strand=Plus/Minus Query 23996 CATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTG 24055 ||||| || |||||||| || || | | ||||| || || | | | ||| || || Sbjct 30400 CATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAACTCCTG 30341 Query 24056 TTCAAT-AGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACA 24114 ||| || ||| ||||| ||| |||| || || || ||||| | || || | Sbjct 30340 TTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTT---TGGGAGGCTTTT 30285 Query 24115 --ATAA-ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 24171 |||| ||||||||||| | ||| |||||||| || ||||| || ||||||||||| | Sbjct 30284 TGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 30225 Query 24172 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 24231 ||||||| ||| ||| | ||||| ||||| || || || || |||||||| ||||| | Sbjct 30224 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 30165 Query 24232 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA-TAAGTCTTTCT 24290 ||||| |||||||| || | ||||| ||||| ||||| |||| |||| | |||| Sbjct 30164 CTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG-CGTTCT 30106 Query 24291 CCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 24347 || || | | ||| ||||| | | ||||| | ||||| || ||| Sbjct 30105 GCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAGCAACA 30046 Query 24348 CAAGGCA--TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 24405 |||| | ||| || ||| || || |||||| ||| |||| ||| ||||| | | Sbjct 30045 CAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGATGT 29988 Query 24406 ATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATC 24465 ||||||||||||| | | |||||||| || ||||| || || || || || || | | Sbjct 29987 ATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCC 29928 Query 24466 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTT 24525 | |||||||| | | |||| | |||||| |||||| | || ||||| | || | Sbjct 29927 CATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGGTTCT 29868 Query 24526 CATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTT 24585 | || ||||||||||| || ||||| || || || || | ||| |||| || Sbjct 29867 CGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAATGACGTT 29808 Query 24586 CGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTG 24645 | | | ||| | ||||| ||| |||||| |||| ||| || |||||||| | Sbjct 29807 CCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCTCTTCCACAG 29748 Query 24646 TCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 24705 ||||||| || || | ||||| ||||| | || ||||| || || |||| || || | Sbjct 29747 TCCAAAAAGAGGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGGGA 29688 Query 24706 AAA 24708 ||| Sbjct 29687 AAA 29685 >seq34 Length=32115376 Score = 116 bits (128), Expect = 4e-21 Identities = 186/266 (70%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 54238 AATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA---CTGGCACGAATATT 54294 ||||||||| ||| | ||||| || || | || ||| | ||| ||| ||||| || Sbjct 8065758 AATACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTG---CGAATGTT 8065814 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | || ||| || || ||||| || | ||||| || | ||| ||| ||||| ||| Sbjct 8065815 ATGAACATTTAGTCCAATACCCCCGGCATTCTTAGATATAACTGCACATTCTTTTAGCGT 8065874 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 54414 ||| || ||||| ||||||||||| || |||| | | |||||||| || || | || Sbjct 8065875 ATCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTCGAAAGCTG 8065934 Query 54415 GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA 54474 | | ||| || || ||||| | || || ||||| || |||||||| |||||||| Sbjct 8065935 TGGTTTAGGAGTCCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCACTTTTCAGA 8065994 Query 54475 AAGTAGATTGTACGTCTCGATAGCTG 54500 | || || ||||||| || || || Sbjct 8065995 CATTAAGTTATACGTCTAGAAAGTTG 8066020 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/199 (73%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 54713 GGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCA-CTTCACT 54771 |||||||||||| || |||||| | ||| | ||||||| |||| || | || Sbjct 8067210 GGAGAATGTTTCTTGGTTCGAGGATTAATGTAGCAATATAAATC-TTCAACAACATCTGA 8067268 Query 54772 AAA--TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 ||| ||| ||| ||||| |||||||||||||| ||||| | | ||| || | |||| Sbjct 8067269 AAACCTAGATTTC--GTTTCCTTGTGTAGATTTGAAACGGCAAGACGAGCAGCCAAAATG 8067326 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAG-TGGCTGCTATTTCGGCTGTCAGAGTGTCCAA 54888 ||||| || |||||| |||| | || | | || | | ||||||| |||| | ||||| Sbjct 8067327 GCATATTCATGATGTTTTGTAAT-CATGCTTGCACATGTCTCGGCTGCCAGATTATCCAA 8067385 Query 54889 TTCTACCGTTGTTACTCCA 54907 |||||| || || |||||| Sbjct 8067386 TTCTACAGTAGTCACTCCA 8067404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715031954800