Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq862 125 7e-24 seq1 82.4 8e-11 >seq862 Length=148971 Score = 125 bits (138), Expect = 7e-24 Identities = 395/612 (65%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| ||||| ||||||||||| |||||| || | |||| | || || Sbjct 29666 AACCCACACCGTTTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAG 29725 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | || || || ||||| || || ||||| || | ||||| || | | Sbjct 29726 AAGGCTGTAGCCTCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACAT 29785 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||||| || || | || || |||||||| ||||| | ||||| || || Sbjct 29786 TGGGAGTCTTTAAAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCG 29845 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || || ||||| || ||| |||||| || | || || ||| || || || ||| | Sbjct 29846 GCGAGTGACGGAATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATT 29905 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | |||| || || ||||| || | ||||| || || ||||| | ||||| |||||| Sbjct 29906 CCAGAGGTTCGTTGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATG 29965 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 || || | || || || ||| | || | || | | | | | || ||| Sbjct 29966 TACTCTTTATTGATTGATACATACATCAAAGACTCTAAAGAAAGGGACTTTCTCTTCAAC 30025 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 ||||| | | | || || | ||||| ||||||| | ||||| | Sbjct 30026 GCCATAAGCAACTTAACTTGTGTTGCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGT 30085 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | | | | || | || ||| | || || || || || || || || ||||| Sbjct 30086 GATTCTAAATCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTT 30145 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 ||||| || || || || || ||||| ||||| |||||||| || || ||||| || ||| Sbjct 30146 TTTTCTGGTAGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTG 30205 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 |||| ||||| || | ||| || ||||| || || ||||| || || || ||| | Sbjct 30206 TCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTA 30265 Query 117194 CTGTTCAAGCAT 117205 |||| || ||| Sbjct 30266 TTGTTTAAACAT 30277 >seq1 Length=65476681 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| ||||| | || || ||||| ||||| | || || || | | Sbjct 54270558 ATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270617 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| || || || | || || Sbjct 54270618 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270677 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||||| || || | ||||| | || ||||| Sbjct 54270678 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTACAAT 54270737 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| ||| |||| || || | |||||||| Sbjct 54270738 ATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCG 54270772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213500387600