Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 143 4e-29 seq789 122 1e-22 seq14 114 2e-20 >seq1 Length=65476681 Score = 143 bits (158), Expect = 4e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 ||| ||||||||||| | || ||| |||| || ||||| || ||| | || |||| | Sbjct 54270554 TACGATGCAAATATTCGTGAAAACATTAACTGGTAAAACGATCACTTTGGAAGTTGAGCC 54270613 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 | ||| || ||| ||| | || || || |||||||||||||| || |||||||| Sbjct 54270614 GAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGA 54270673 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||||| | || || ||||| || || || |||| ||| |||| ||||| ||||| Sbjct 54270674 TCAACAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTA 54270733 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 54270734 CAATATCCAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 54270787 Score = 125 bits (138), Expect = 1e-23 Identities = 167/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | || || ||||| || ||| | || |||| | | | Sbjct 54270786 ATGCAGATTTTTGTGAAGACATTGACTGGTAAAACGATCACTTTGGAAGTTGAGCCGAGT 54270845 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || |||||||||||||| || |||||||||||| Sbjct 54270846 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGATAAAGAAGGGATTCCACCTGATCAA 54270905 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || ||||| || || || |||| ||| |||| ||||| |||| || Sbjct 54270906 CAACGTCTGATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACATTGTCTGATTTACAT 54270965 Query 124719 ATTCAA-AAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||| ||||| || ||| | || ||||| || ||| | || |||||||| Sbjct 54270966 ATCCAAGAAAGAGTCCACTCTTCACTTGGTGTTGCGTCTTCGTGGTGGTAT 54271016 >seq789 Length=29961 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| || || |||||||||||| |||| |||| | | Sbjct 821 ATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCTGCT 762 Query 124599 GATACAATTTCTA-ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| | |||| | |||||| |||||||||||||| || ||||| || || Sbjct 761 GATACAATAGAAGCAGTTAAGGC-GAAAATCCAAGATAAAGAAGGCATCCCACCAGACCA 703 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || |||||| | || ||| | ||||| | || || || Sbjct 702 ACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTACAA 643 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | ||| | || | ||| | || |||||||| Sbjct 642 TATACAGAAGGAATCAACACTCCATCTTGTCCTTCGTCTTCGTGGTGGTAT 592 >seq14 Length=34464480 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| |||||||| | ||||| || |||||||| | ||| | || | | Sbjct 20622083 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20622024 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20622023 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621964 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20621963 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621904 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20621903 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20621853 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| ||||| |||||||| | ||||| || |||||||| | ||| | || | | Sbjct 20638775 AATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAG 20638716 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20638715 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638656 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20638655 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638596 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20638595 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638545 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | |||||| | || || || || || || | ||| | || | | Sbjct 20638319 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638260 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20638259 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638200 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20638199 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638140 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20638139 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638089 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | |||||| | || || || || || || | ||| | || | | Sbjct 20638547 AATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638488 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20638487 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20638428 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20638427 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20638368 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20638367 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20638317 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| | || || || || || || | ||| | || | | Sbjct 20621855 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621796 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20621795 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621736 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20621735 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621676 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20621675 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20621625 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| | || || || || || || | ||| | || | | Sbjct 20637863 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637804 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20637803 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637744 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20637743 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637684 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20637683 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20637633 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| | || || || || || || | ||| | || | | Sbjct 20638091 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20638032 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20638031 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637972 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20637971 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637912 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| ||||| | || | ||| |||| ||||| || Sbjct 20637911 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 20637861 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| | || || || || || || | ||| | || | | Sbjct 20621627 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20621568 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20621567 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20621508 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20621507 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20621448 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || || || || ||||| || ||| | |||||||| Sbjct 20621447 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACG 20621412 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| | ||||| | || || || || || || | ||| | || | | Sbjct 20637635 AATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAG 20637576 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||| || ||||| ||||||||||| || ||||| || Sbjct 20637575 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 20637516 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || || || || || || || || ||| | || || | || || || Sbjct 20637515 ACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 20637456 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 || || || || ||||| || ||| | |||||||| Sbjct 20637455 CATCCAGAAGGAGTCAACCTTACATCTTGTTTTACG 20637420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755447642768000