Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq690 89.7 6e-13 seq14 87.8 2e-12 seq1 87.8 2e-12 seq670 86.0 7e-12 seq36 82.4 9e-11 >seq6 Length=1395986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 328043 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 328102 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 328103 TACTATCGAGGA 328114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 333627 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 333686 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 333687 TACTATCGAGGA 333698 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 337357 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 337416 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 337417 TACTATCGAGGA 337428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 345925 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 345984 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 345985 TACTATCGAGGA 345996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 348745 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 348804 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 348805 TACTATCGAGGA 348816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 329903 CTCCTCGACCGGGAATCGAACCAGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 329962 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 329963 TACTATCGAGGA 329974 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 331769 CTCCTCGACCGGGAATCGAACCAGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 331828 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 331829 TACTATCGAGGA 331840 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 339217 CTCCTCGACCGGGAATCGAACCAGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 339276 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 339277 TACTATCGAGGA 339288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||||| | ||||||||||||| || | || ||||||||||||| |||||||||||||| Sbjct 335489 TCCTCGACCGGGAATCGAACCCGGGCTTTCCACGTGACAGGCGGAGATACTCACCACTAT 335548 Query 60127 ACTACCGAGGA 60137 |||| ||||| Sbjct 335549 ACTATTGAGGA 335559 >seq690 Length=2099804 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 640574 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 640515 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 640514 TACAATCGAGGA 640503 >seq14 Length=34464480 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || || | ||| || || |||||| || || ||||| |||| |||||| || | Sbjct 20621412 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20621471 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||||||||||||| || | || || ||||| | || | | || ||| Sbjct 20621472 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20621531 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || ||| | || | | || || || | ||||| || | |||||| Sbjct 20621532 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20621591 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || | |||||| ||||| ||||||||| Sbjct 20621592 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 || || || | ||| || || |||||| || || ||||| |||| |||||| || | Sbjct 20637420 CGTAAAACAAGATGTAAGGTTGACTCCTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 20637479 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | ||||||||||||||| || | || || ||||| | || | | || ||| Sbjct 20637480 TCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 20637539 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 || ||| || ||| | || | | || || || | ||||| || | |||||| Sbjct 20637540 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCACCTCCAACGTGATC 20637599 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || || | |||||| ||||| ||||||||| Sbjct 20637600 GTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637635 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || ||| | || | ||||| || ||| || || || ||||| |||| Sbjct 20621627 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20621686 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | ||||||||||||||| || | || || ||||| | || Sbjct 20621687 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20621746 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| || ||| | || | | || || || | ||||| Sbjct 20621747 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20621806 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || || || | |||||| ||||| ||||||||| Sbjct 20621807 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20621855 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || ||| | || | ||||| || ||| || || || ||||| |||| Sbjct 20637635 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20637694 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | ||||||||||||||| || | || || ||||| | || Sbjct 20637695 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637754 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| || ||| | || | | || || || | ||||| Sbjct 20637755 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20637814 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || || || | |||||| ||||| ||||||||| Sbjct 20637815 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20637863 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || ||| | || | ||||| || ||| || || || ||||| |||| Sbjct 20637863 TCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGA 20637922 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 |||||| || | || || | ||||||||||||||| || | || || ||||| | || Sbjct 20637923 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGGAGG 20637982 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || ||||| ||| || ||| | || | | || || || | ||||| Sbjct 20637983 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCCAC 20638042 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| || || || || | |||||| ||||| ||||||||| Sbjct 20638043 CTCCAACGTGATCGTCTTACCAGTCAACGTCTTCACAAATATTTGCATT 20638091 >seq1 Length=65476681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||||||||| || | ||| ||| || || ||||||||||||| || || || | Sbjct 54270773 ACGCAACACCAAGTGAAGAGTGGACTCTTTCTGGATATTGTAATCAGACAATGTGCGACC 54270714 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || ||||||||||||||||| || || || || || || || | || | | || || Sbjct 54270713 ATCTTCTAGCTGCTTACCAGCAAAGATCAGACGTTGTTGATCAGGTGGAATCCCTTCTTT 54270654 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || || | || | | ||||| |||| || || || | ||||| Sbjct 54270653 ATCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTCGGCTCAACTTCCAAAGTGAT 54270594 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || |||| || || || || |||||||| Sbjct 54270593 CGTTTTACCAGTTAATGTTTTCACGAATATTTGCAT 54270558 >seq670 Length=660561 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 43136 CTCCTCGACCGGGAATCGAACCTGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 43077 Query 60126 TACTACCGAGGA 60137 ||| | |||||| Sbjct 43076 TACAATCGAGGA 43065 >seq36 Length=9384253 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | |||||||||||| ||| || || ||||||||||||| ||| |||||||| Sbjct 4911141 CTCCTCGACCGGGAATCGAACC-TGGCCTTCCACGTGACAGGCGGAGATATTCACCACTG 4911199 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4911200 TACTATCGAGGA 4911211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571811274267800