Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq789 86.0 9e-12 seq659 84.2 3e-11 >seq789 Length=29961 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || ||||| || |||||| || || |||||||||| | ||| || | |||||| ||| Sbjct 625 GTTGATTCCTTCTGTATATTGTAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCA 684 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || | ||| || || || || || |||||||||||||| Sbjct 685 GCAAAAATTAAACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTG 731 >seq659 Length=558134 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 209089 ACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAGCAGGAGA 209148 ||| || |||||||||||||||| ||||||| | ||||| ||||| ||||| |||| Sbjct 22355 ACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGC 22414 Query 209149 ACATTTTAATCCATATAATAGACAACATGGAGATATTAG-TGATAAAATACATCGTCATG 209207 ||||| |||||| ||| | ||||||||| | || |||| || |||||||| Sbjct 22415 TCATTTCAATCCAACTAAACAAGAACATGGAG-CACCAGAAGATAGTAT---TCGTCATG 22470 Query 209208 TTGGTGATTTTGGTAATGT 209226 ||||||| | || ||||| Sbjct 22471 TTGGTGACCTGGGAAATGT 22489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743518174739200