Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq862 257 2e-63 >seq862 Length=148971 Score = 257 bits (284), Expect = 2e-63 Identities = 586/877 (67%), Gaps = 56/877 (6%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| |||||||| || || |||||||| | ||| || ||||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT---------------ATTTA-------- 16042 ||| || ||||||||||| | ||| ||| ||| | Sbjct 30526 CATGAAGTCAAAAGGATTGTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAGA 30467 Query 16043 -TCGCA-------TC----CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATA 16089 | ||| || |||| | |||| | || || || || | |||||| || || Sbjct 30466 TTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGTA 30407 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||| ||| || | || ||||| || ||||| | || || | ||||| | |||||| Sbjct 30406 CTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAAA 30347 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG 16209 | | |||||| |||||| || | ||||| | || | || | ||| ||||| Sbjct 30346 CTCCTGTTCTATCAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTCTTTG--GGAGG 30290 Query 16210 GTTTA--ATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCT 16266 ||| |||| |||||||||| || |||||| ||||||||||| | ||||||||| || Sbjct 30289 CTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCT 30230 Query 16267 ACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAA 16326 ||| ||||| || || ||| | || || ||||| || |||||||| |||| ||| || Sbjct 30229 ACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAA 30170 Query 16327 TATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCG 16386 |||||| ||||| ||||||||| || | |||||| ||||| ||||| ||||| || || Sbjct 30169 TATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAGCG 30110 Query 16387 CTCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgtt 16445 || | | | | |||| | | | ||||| | | ||||| | || |||| Sbjct 30109 TTCTGCAAAAG-TAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTAG 30051 Query 16446 tAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAA 16505 |||||| | | ||| ||| || || || | | | | ||||||| ||| | Sbjct 30050 CAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTAGAGTCTTTGA 29991 Query 16506 TATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAA 16565 | || ||||| || | |||| |||||||| || ||||||||||| || |||||||| | Sbjct 29990 TGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 29931 Query 16566 AACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGT 16625 ||||| || || | | | || | || || ||||| | || | ||| | || Sbjct 29930 TCCCATAGAAACAACGAACCTCTGGAATCTGGACTTCTTGGCTGAAGCGTTCCAGGAGGT 29871 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttt 16685 | ||| || ||||| || || || ||||| || || | | || || ||| Sbjct 29870 TCTCGAGGACAATTCCGTCACTCGCCGCAAAGAAGGCTAACACGTAGGATATGAAA---- 29815 Query 16686 tttCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCT 16739 | ||| || || |||||| | || || |||||||| ||||||||||||| Sbjct 29814 TGACGT--TCCCCAACTTTTAAAGACTCCCAATGTATGAAATCTTTGGATAAATCGACCT 29757 Query 16740 CTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 |||| |||||||||||||| || |||||||| ||||| Sbjct 29756 CTTCCACAGTCCAAAAAGAGGCTACAGCCTTCTTATA 29720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462506883461000