Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq862 190 2e-43 >seq862 Length=148971 Score = 190 bits (210), Expect = 2e-43 Identities = 460/690 (67%), Gaps = 56/690 (8%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || |||||||||||||| || ||||| | |||||| ||||| Sbjct 30586 TTGATATTCACCAACTCGCTTCTCAAAGAAGTTAGTCTTTCCTTCGATTGATATGTTTTC 30527 Query 13975 CATAAAATCAAATGGATTTGT-----TGA--CAT---------AAACACTTTA------- 14011 ||| || ||||| ||||| || ||| ||| ||||| || | Sbjct 30526 CATGAAGTCAAAAGGATT-GTCAGAATGATACATCTAAAAGGAAAACAATTAAATAGAAG 30468 Query 14012 --------------TCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATAT 14057 ||| |||| ||||| | |||| || || || || || ||||| | Sbjct 30467 ATTTGCAAACCTTTTCATAACCAAGTTCAACCAGTAGCCTGTCAGCGATAAATTCAATGT 30408 Query 14058 ATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAA 14117 | ||| |||| || | |||||||| || |||| | || || | | || ||||| Sbjct 30407 ACTGACACATCAATTTGCAATTCATCCCAATTAAGCTGACTGGTAGGGCTTCGGATAAAA 30348 Query 14118 ATTCTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGA 14176 | || | |||||| ||| || ||||| |||| || | || | ||| || | || Sbjct 30347 ACTCCTGTTCTATCAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCTTTGG---GA 30292 Query 14177 GGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCT 14233 || | ||| | | |||||||| | || ||| || ||||||||||| || || || ||| Sbjct 30291 GGCTTTTTGATAATATGTTTAAACAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCT 30232 Query 14234 CTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAA 14293 ||||| || | ||| || ||| | | ||| ||||| | |||||||| || | ||| Sbjct 30231 CTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAG 30172 Query 14294 AATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAAT 14353 ||||| || || || || ||||| || | || || ||||| ||||| || | ||| Sbjct 30171 AATATAGCTGCAAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAACTAAG 30112 Query 14354 CGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14413 |||||| |||| | | ||| | ||||| | | ||||| | || ||||| Sbjct 30111 CGTTCTGCAAAAGTAGATTTAGAATCACCAATCCAATCTAATGCCCACTGAGCCTTTTTA 30052 Query 14414 ttAATAAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTAC 14468 || | || | ||| || || || || || | || || |||| ||||| ||| Sbjct 30051 GCAACACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTAGAGTCT 29995 Query 14469 TTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTA 14528 ||| |||||||||||||| | ||| |||||||||||||| || || || ||||||| Sbjct 29994 TTG--ATGTATGTATCAATCAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTA 29937 Query 14529 TCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||| | ||||| ||||| | | | |||| Sbjct 29936 TCTGCATCCCATAGAAACAACGAACCTCTG 29907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340264051800