Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq789 82.4 6e-11 >seq789 Length=29961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 18095 TTAT-CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || || || || | ||| || | || ||||||||||| || || || ||||||| Sbjct 590 TTATACCACCACGAAGACGAAGGACAAGATGGAGTGTTGATTCCTTCTGTATATTGTAGT 649 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| | ||| | |||||||| ||||||||| ||| | || | | |||||| || Sbjct 650 CGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAAACGTTGTTGGTCTG 709 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTG-TGCAACAGTGTCACCGGGC 18272 || | |||||| ||||| |||| | || | | ||| | | | || ||| | ||| Sbjct 710 GTGGGATGCCTTCTTTATCTTGGATTT-TCGCCTTAACTGCTTCTATTGTATCAGCAGGC 768 Query 18273 TCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || ||| | || || |||| || || | ||| || || ||||| ||||| || Sbjct 769 TCAACTTCTAGAGTTATAGTTTTTCCAGTAAGTGTCTTCACGAAAATCTGCATCTT 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379339908419325