Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mansoni_20[refseq_20GCF_5F000237925.1_202011-12-13] 885 sequences; 364,532,842 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq862 125 6e-24 seq789 91.5 1e-13 seq14 91.5 1e-13 >seq862 Length=148971 Score = 125 bits (138), Expect = 6e-24 Identities = 496/772 (64%), Gaps = 10/772 (1%) Strand=Plus/Plus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 || ||| | || || || ||||| | || | ||| | | || || ||||| | ||| Sbjct 29678 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCC 29737 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTC 57659 || |||||||| || ||||| || || | || || ||| | | ||||||| || | Sbjct 29738 TCTTTTTGGACTGTGGAAGAGGTCGATTTATCCAAAGATTTCATACATTGGGAGTCTTTA 29797 Query 57660 AAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 |||| || | |||| || ||||||| || || || || || || || Sbjct 29798 AAAGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCCTTCTTTGCGGCGAGTGACGGA 29857 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGA 57779 ||||| |||||| | | ||| | || |||||||| || | | |||| | Sbjct 29858 ATTGTCCTCGAGAACCTCCTGGAACGCTTCAGCCAAGAAGTCCAGATTCCAGAGGTTCGT 29917 Query 57780 TGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTC 57839 || || || || | || | || || || || | || || |||||||| || || | Sbjct 29918 TGTTTCTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTG 29977 Query 57840 ATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA--CTGTTCAACGCGATC-GAA 57896 || ||||| ||| | || ||| | ||||| | | || |||||||| || | | Sbjct 29978 ATTGATACATACATCAAAGACTCTAA--AGAAAGGGACTTTCTCTTCAACGCCATAAGCA 30035 Query 57897 ACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACG 57956 || | | | | || || ||||| ||||| || | | ||||| | | Sbjct 30036 ACTTAACTTGTGTT-GCTAAAAAGGCTCAGTGGGCATTAGATTGGATTGGTGATTCTAAA 30094 Query 57957 GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGC 58016 | || || || || | || | || || || || || |||||| | || ||||| || Sbjct 30095 TCTACTTTTGCAGAACGCTTAGTTGCTTTTGCAGCAGTGGAAGGTGTCTTTTTTTCTGGT 30154 Query 58017 AGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 |||||||| || ||||| ||| | |||||||| || || ||||| || ||| | |||||| Sbjct 30155 AGCTTTGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGC 30214 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 || || || || | ||||| || || ||| |||||| || || ||| ||| Sbjct 30215 AATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTGTTTAAA 30274 Query 58137 CACATTGTCAATAAACCGACGCGGGATCGCATCTTG-GACATTA-TCACCGAGGCGGTCG 58194 || ||| |||| || || | || || | ||| | || || | | |||||||| Sbjct 30275 CATATTATCAAAAAGCCTCCCAAAGAACG--TGTTGAGTCAATAATAAGAGAGGCGGTTC 30332 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 ||| ||| | |||||| | ||||||||||||| || | | | || ||||| Sbjct 30333 TGATAGAACAGGAGTTTTTATCCGAAGCCCTACCAGTCAGCTTAATTGGGATGAATTGCA 30392 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT 58306 | ||||||| |||||||||| ||| | || ||||| || || | ||||| Sbjct 30393 AATTGATGTGTCAGTACATTGAATTTATCGCTGACAGGCTACTGGTTGAACT 30444 >seq789 Length=29961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || ||||| || || | || ||||| || Sbjct 824 AAGATGCAGATTTTCGTGAAGACACTTACTGGAAAAACTATAACTCTAGAAGTTGAGCCT 765 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | || | | ||| | || || || ||| || || |||||| | || || ||| Sbjct 764 GCTGATACAATAGAAGCAGTTAAGGCGAAAATCCAAGATAAAGAAGGCATCCCACCAGAC 705 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || || ||| |||| || ||||||||||| ||||||| | | | ||| | ||| || Sbjct 704 CAACAACGTTTAATTTTTGCTGGCAAACAACTGGAAGA-TGGACGAACTCTTTCCGACTA 646 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAGAAGCG 31427 || || || || ||||| || || ||||| || ||| | || | || |||| || || Sbjct 645 CAATATACAGAAGGAATCAACACTCCATCTTGTCCTTCGTCTTCGTGGTGGTATAATCG 587 >seq14 Length=34464480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || || || || Sbjct 20621854 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20621795 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20621794 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621735 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20621734 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20621676 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20621675 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20621642 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||||| || || || || | || || || || Sbjct 20622082 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20622023 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20622022 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20621963 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20621962 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20621904 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20621903 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20621870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || || || || Sbjct 20637862 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20637803 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20637802 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637743 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20637742 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20637684 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20637683 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20637650 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || || || || Sbjct 20638090 ATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638031 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20638030 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20637971 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20637970 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20637912 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20637911 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20637878 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || || || || Sbjct 20638318 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638259 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20638258 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638199 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20638198 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20638140 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20638139 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20638106 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || |||||||| | || || || || Sbjct 20638546 ATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGT 20638487 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20638486 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638427 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20638426 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20638368 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20638367 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20638334 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| ||||||| || || || || | || || || || Sbjct 20638774 ATGCAGATATTCGTAAAGACATTGACAGGGAAGACTATAACATTGGAGGTGGAGCCTAGT 20638715 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| || || ||||| ||||| | || || ||||| Sbjct 20638714 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 20638655 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || ||| | || |||||||| || ||||||||||| | | | ||| || || || || Sbjct 20638654 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGA-TGGACGTACTCTGTCTGACTACAA 20638596 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || ||||| |||||||| ||||| || ||| Sbjct 20638595 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTT 20638562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761468709200